yachenhu

Pinned Repositories

• An-Introduction-To-Applied-Bioinformatics

  Interactive lessons in bioinformatics.

  Language:Python00

• BIGSAP

  Bacterial Isolate Genome Sequence Analysis Pipeline

  Language:Python00

• chipseq

  ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).

  Language:Python00

• dna-seq-gatk-variant-calling

  This Snakemake pipeline implements the GATK best-practices workflow

  Language:Python00

• doc-ANNOVAR

  Documentation for the ANNOVAR software

  00

• GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python00

• probstat-exercises

  Language:Jupyter Notebook00

• py-pkgs-cookiecutter

  Cookiecutter template for Python packages

  Language:Python00

• rna-seq-kallisto-sleuth

  A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.

  Language:Python00

• rna-seq-star-deseq2

  RNA-seq workflow using STAR and DESeq2

  Language:Python01

yachenhu's Repositories