yafeng

Harvard medical schoolBoston

Pinned Repositories

DEqMS
DEqMS is a tool for quantitative proteomic analysis
Language:R22 5 203
idconverter
A tool to convert Ensembl or Uniprot protein ID to gene symbol
Language:Python1 2 00
ML-course
KTH machine learning course DD2431 lab exercises
Language:HTML1 2 01
nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
Language:Nextflow0 2 00
pan-cancer-proteogenomics-analysis
this repo contains workflow and scripts used for pan-cancer Proteogenomics analysis
Language:Perl0 2 11
pqpq_python
rewirte pqpq in python, do clustering at peptide or psm level
Language:Python2 1 02
proteogenomics_python
python scripts for proteogenomics analysis
Language:Python10 4 510
SpectrumAI
R script to automatically inspect MS2 spectra of single-subsititution peptide identifications
Language:R8 6 26
SpliceVista
Splice variant analysis in shotgun proteomics data
Language:Python8 3 02
trypsin
An in silico trypsin digestion tool
Language:Python4 2 01

yafeng's Repositories

yafeng/DEqMS
DEqMS is a tool for quantitative proteomic analysis
Language:R22 5 203
yafeng/proteogenomics_python
python scripts for proteogenomics analysis
Language:Python10 4 510
yafeng/SpectrumAI
R script to automatically inspect MS2 spectra of single-subsititution peptide identifications
Language:R8 6 26
yafeng/SpliceVista
Splice variant analysis in shotgun proteomics data
Language:Python8 3 02
yafeng/trypsin
An in silico trypsin digestion tool
Language:Python4 2 01
yafeng/pqpq_python
rewirte pqpq in python, do clustering at peptide or psm level
Language:Python2 1 02
yafeng/idconverter
A tool to convert Ensembl or Uniprot protein ID to gene symbol
Language:Python1 2 00
yafeng/ML-course
KTH machine learning course DD2431 lab exercises
Language:HTML1 2 01
yafeng/nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
Language:Nextflow0 2 00
yafeng/pan-cancer-proteogenomics-analysis
this repo contains workflow and scripts used for pan-cancer Proteogenomics analysis
Language:Perl0 2 11
yafeng/plottingtools
a collection of python scripts to generate standard figures
Language:Jupyter Notebook2 01
yafeng/proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
Language:Groovy2 0
yafeng/scriptRepo
A repo storing various scripts
Language:Python2 0
yafeng/sorf_analysis
python and R scripts for sORF analysis
Language:Rich Text Format1 0
yafeng/statistical_analysis_of_proteomics_data
a repository to store R scripts used for statistical analysis of proteomics data
2 0
yafeng/strelka
Somatic and germline small variant caller for mapped sequencing data
Language:C++2 0
yafeng/svm_predict_pi
svm regression to predict peptide's isoelectric point
Language:Jupyter Notebook2 0
yafeng/zhu
python_scilifelab course
Language:Python1 0

yafeng

Pinned Repositories

DEqMS

idconverter

ML-course

nf-core-dda-quant-proteomics

pan-cancer-proteogenomics-analysis

pqpq_python

proteogenomics_python

SpectrumAI

SpliceVista

trypsin

yafeng's Repositories

yafeng/DEqMS

yafeng/proteogenomics_python

yafeng/SpectrumAI

yafeng/SpliceVista

yafeng/trypsin

yafeng/pqpq_python

yafeng/idconverter

yafeng/ML-course

yafeng/nf-core-dda-quant-proteomics

yafeng/pan-cancer-proteogenomics-analysis

yafeng/plottingtools

yafeng/proteogenomics-analysis-workflow

yafeng/scriptRepo

yafeng/sorf_analysis

yafeng/statistical_analysis_of_proteomics_data

yafeng/strelka

yafeng/svm_predict_pi

yafeng/zhu