yagoubali
Bioinformatist, Bioinformatician, and Computational Biologist.
@h3abionet, @covenant-university-bioinformatics Brazil
Pinned Repositories
1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
Africans-specific_ancestry-informative_SNPs
Africans specific ancestry informative SNPs
bioinfotools
Documenting usage and experience with bioinformatic tools
Genome-Analyses
Test scripts for H3Africa Cross-Consortium Genome Analyses
mathematical_modeling_of_biology_system
This project has been engaged in the use of mathematical modeling in the Gene Regulatory System (GRN). Different mathematical models that are inspired in gene regulatory network such as Central dogma, Hill function, Gillespie algorithm, Oscillating gene network, and Deterministic vs Stochastic modelings are discussed along with their codes that are
MCMC-Sample-Codes
Code for simple Markov Chain Monte Carlo simulations, for beginners
postGWAS_plot
scripts for plotting and evaluating GWAS summary statistics
Pymol_DasLab
Favorite RNA/protein viewing scripts from the Das lab
yagoubali's Repositories
yagoubali/Africans-specific_ancestry-informative_SNPs
Africans specific ancestry informative SNPs
yagoubali/Biocontainers
Bioinformatics containers
yagoubali/CHM13
The complete sequence of a human genome
yagoubali/CU_projects
yagoubali/Genome-Analyses
Test scripts for H3Africa Cross-Consortium Genome Analyses
yagoubali/mathematical_modeling_of_biology_system
This project has been engaged in the use of mathematical modeling in the Gene Regulatory System (GRN). Different mathematical models that are inspired in gene regulatory network such as Central dogma, Hill function, Gillespie algorithm, Oscillating gene network, and Deterministic vs Stochastic modelings are discussed along with their codes that are
yagoubali/MCMC-Sample-Codes
Code for simple Markov Chain Monte Carlo simulations, for beginners
yagoubali/biomarkers
Genetics of blood and urine biomarkers in the UK Biobank
yagoubali/BookCode_Edition1
yagoubali/DSML-book-Lectures
yagoubali/DSML-book-Programs
Programs
yagoubali/fastq-dl
Download FASTQ files from SRA or ENA repositories.
yagoubali/gatk
Official code repository for GATK versions 4 and up
yagoubali/GenoTools
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
yagoubali/hello-github-actions
yagoubali/js4ds
JavaScript for Data Science
yagoubali/LocusExplorer
An interactive graphical illustration of genetic associations and their biological context
yagoubali/logo
logos to be used in web applications
yagoubali/LUSTR
yagoubali/miniTR
yagoubali/modules
Environment Modules: provides dynamic modification of a user's environment
yagoubali/OpenBio
yagoubali/post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
yagoubali/RepeatCatalogs
yagoubali/sib-swiss-training-collection
Collection of bioinformatics training materials
yagoubali/SkeeterBuster
Aedes aegypti population dynamics simulation model.
yagoubali/SPGWAS2
Testing scripts for SPGWAS project II
yagoubali/Testing
yagoubali/ukbiobank
yagoubali/varainats_calling_annotations