Pinned Repositories
ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
beyond-single-core-R
Short tour of parallel and foreach packages, and how to think about scaling data analyses
coca
R package for COCA: Cluster-of-Clusters Analysis
DGE_workshop
Flow
R-based genomics workflow management
HAMFA
Hypoxia associated molecular feature analysis
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
pancan_aging
PARIS
PAn-canceR Inferred Synthetic lethalities (PARIS), a machine learning-based approach to predict cancer vulnerabilities
yajass's Repositories
yajass/pancan_aging
yajass/ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
yajass/BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
yajass/beyond-single-core-R
Short tour of parallel and foreach packages, and how to think about scaling data analyses
yajass/coca
R package for COCA: Cluster-of-Clusters Analysis
yajass/DGE_workshop
yajass/Flow
R-based genomics workflow management
yajass/HAMFA
Hypoxia associated molecular feature analysis
yajass/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
yajass/PARIS
PAn-canceR Inferred Synthetic lethalities (PARIS), a machine learning-based approach to predict cancer vulnerabilities
yajass/pgs_from_vcf
yajass/phial
Precision Heuristics for Interpreting the Alteration Landscape
yajass/qgg-labs
The computer labs for the 2019 Cornell class of quantitative genetics and genomics
yajass/scripts
yajass/skitools
General purpose mskilab R tools
yajass/tcga_aging_final
TCGA Aging Project
yajass/xCell
Cell types enrichment analysis
yajass/yajas