yamagatm
Neuroscientist at Harvard University. Natural and artificial visual system. Bioinformatics. scRNA-seq. Image analysis.
Harvard UniversityCambridge, MA
Pinned Repositories
EJDict
English-Japanese Dictionary data
ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
MAST
Tools and methods for analysis of single cell assay data in R
models
Models and examples built with TensorFlow
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
seurat
R toolkit for single cell genomics
Simple_Neurite_Tracer
The ImageJ framework for semi-automated tracing of neurons and tubular structures
t-SNE-Heatmaps
Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
yamagatm's Repositories
yamagatm/EJDict
English-Japanese Dictionary data
yamagatm/ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
yamagatm/models
Models and examples built with TensorFlow
yamagatm/seurat
R toolkit for single cell genomics
yamagatm/Simple_Neurite_Tracer
The ImageJ framework for semi-automated tracing of neurons and tubular structures
yamagatm/t-SNE-Heatmaps
Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
yamagatm/Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
yamagatm/MAST
Tools and methods for analysis of single cell assay data in R
yamagatm/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
yamagatm/aozorabunko
yamagatm/awesome-bci
Curated Collection of BCI resources
yamagatm/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
yamagatm/bioinformatics-coffee-hour
Short lessons from FAS Informatics coffee hour
yamagatm/BluePyOpt
Blue Brain Python Optimisation Library
yamagatm/book-mlearn-gyomu
Book sample (AI Machine-learning Deep-learning)
yamagatm/crispycrunch
Web app for CRISPR experiment setup and analysis
yamagatm/learning-bioinformatics-at-home
resources for learning bioinformatics
yamagatm/machinelearning
yamagatm/NeuroM
Neuronal Morphology Analysis Tool
yamagatm/opencv
Open Source Computer Vision Library
yamagatm/PyDictionaryProject
yamagatm/robustbase
:exclamation: This is a read-only mirror of the CRAN R package repository. robustbase — Basic Robust Statistics. Homepage: http://robustbase.r-forge.r-project.org/
yamagatm/singleCellRNAseq_workshop
Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
yamagatm/Vocab