yangjun9095
Computational Biologist @czbiohub-sf working on single-cell multi-omics data analysis (scRNA-seq, scATAC-seq, spatial transcriptomics, etc.)
Pinned Repositories
excellxgene
mRNADynamics
Code for mRNA dynamics and protein dynamics analysis
CellOracle
This is the alpha version of the CellOracle package
Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
CentralDogma_analysis
Pipeline for anallysis+generating plots for the Central Dogma project.
in-situ_image_analysis
Image analysis of in situ (both colorimetric and fluorescence) for in situ vs FISH vs MS2 manuscript
OpposingGradients_Analysis
This is a repository for scripts used for Opposing gradients project.
Optogenetics
Analysis scripts for optogenetics project
pySankey
create sankey diagrams with matplotlib
Worms_analysis
yangjun9095's Repositories
yangjun9095/OpposingGradients_Analysis
This is a repository for scripts used for Opposing gradients project.
yangjun9095/Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
yangjun9095/CentralDogma_analysis
Pipeline for anallysis+generating plots for the Central Dogma project.
yangjun9095/in-situ_image_analysis
Image analysis of in situ (both colorimetric and fluorescence) for in situ vs FISH vs MS2 manuscript
yangjun9095/Optogenetics
Analysis scripts for optogenetics project
yangjun9095/pySankey
create sankey diagrams with matplotlib
yangjun9095/Worms_analysis