/RFdesignScripts

scripts to streamline RFdesign and MPNN

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

RFdesignScripts

scripts to streamline RFdesign and MPNN -prerequisite: RFDesign,ProteinMPNN,OmegaFold,PyRosetta -design flow: RFDesign(hallucination or inpainting)-relax-evaluation using PyRosetta-determine position to keep in MPNN (PDBtoFasta.py, FindPosition.py)-ProteinMPNN-generate a single fasta file (convertsinglefasta.py)-Predict structure using OmegaFold-get plddt values (plddt_calc.py)