yanhui09's Stars
shenwei356/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
WatsonLab/MAGpy
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
voutcn/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
caporaso-lab/sourcetracker2
SourceTracker2
cozygene/FEAST
Fast expectation maximization for microbial source tracking
jtamames/SqueezeMeta
A complete pipeline for metagenomic analysis
tntvis/tnt.genome
Minimal genome browser library created with TnT
QuentinLetourneur/Let-it-bin
Optimize workflow for binning metagenomic short reads from multiple samples
loneknightpy/idba
sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
eclarke/komplexity
A method of assessing sequence complexity based on kmer frequencies
bioinformatics-centre/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
chrisquince/CopenhagenWorkshop
LomanLab/EBAME18
Long read metagenomics practical at EBAME18
caporaso-lab/mockrobiota
A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
igem-waterloo/uwaterloo-igem-2015
Software for the 2015 Waterloo iGEM Team
hk1785/OMiAT
Optimal Microbiome-Based Association Test (OMiAT)
JiyuanHu/massMap
A two-stage microbial association mapping framework with advanced FDR control
MrOlm/drep
Rapid comparison and dereplication of genomes
jackfrued/Python-100-Days
Python - 100天从新手到大师
sejmodha/MetaViC
Virus metagenomic pipeline for unknown host or in absence of a host genome
MaayanLab/clustergrammer-docs
The documentation for the Clustergrammer project
will-rowe/hulk
Histosketching Using Little Kmers
bailey-lab/SeekDeep
Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
RasmussenLab/vamb
Variational autoencoder for metagenomic binning
cssmillie/StrainFinder
StrainFinder
Russel88/DAtest
Compare different differential abundance and expression methods
epruesse/ymp
Flexible omics pipeline
HRGV/DGHM2017_assembly
example workflow for de-novo assembly using spades and reads and assembly QC