yanwu2014

AI/ML & Computational Biology

Altos LabsSan Diego

Pinned Repositories

cellMapper
R package for classifying single-cell RNA-seq datasets
Language:R4 1 00
chromfunks
An R package for building regulatory networks using chromatin accessibility datasets
Language:HTML1 1 02
dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
Language:Python0 0 00
genotyping-matrices
Assign genotype to cells from scRNA-seq data
Language:Python1 0 00
perturbLM
Linear model for analyzing genetic perturbations with scRNA-seq readouts
Language:R2 0 02
scTHS-Seq-processing
Scripts for generating a peaks by cells chromatin accessibility counts matrix from the scTHS-Seq method
Language:R5 0 00
SEUSS-Analysis
Code to analyze effects of gene overexpression on the transcriptome of human stem cells
Language:R2 0 00
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++0 0 00
swne
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Language:R103 5 2820
teratoma-analysis-code
Code to reproduce the analysis seen in McDonald, Wu et al. Cell, 2020 (https://doi.org/10.1016/j.cell.2020.10.018)
Language:R5 1 12

yanwu2014/swne
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Language:R103 5 2820
yanwu2014/scTHS-Seq-processing
Scripts for generating a peaks by cells chromatin accessibility counts matrix from the scTHS-Seq method
Language:R5 0 00
yanwu2014/teratoma-analysis-code
Code to reproduce the analysis seen in McDonald, Wu et al. Cell, 2020 (https://doi.org/10.1016/j.cell.2020.10.018)
Language:R5 1 12
yanwu2014/cellMapper
R package for classifying single-cell RNA-seq datasets
Language:R4 1 00
yanwu2014/perturbLM
Linear model for analyzing genetic perturbations with scRNA-seq readouts
Language:R2 0 02
yanwu2014/SEUSS-Analysis
Code to analyze effects of gene overexpression on the transcriptome of human stem cells
Language:R2 0 00
yanwu2014/chromfunks
An R package for building regulatory networks using chromatin accessibility datasets
Language:HTML1 1 02
yanwu2014/genotyping-matrices
Assign genotype to cells from scRNA-seq data
Language:Python1 0 00
yanwu2014/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
Language:Python0 0 00
yanwu2014/spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++0 0 00