yasfoster
Conservation genomics & epigenetics in critically endangered birds.
University of OtagoBeerwah, Australia
Pinned Repositories
AgIn
Process SMRT sequencing kinetic summary to predict regional methylation on large genome
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
DevNet
The DevNet project on github stores the PacBio DevNet website.
gepard
Genome Pair Rapid Dotter
hierfstat
the hierfstat package
hpc_training
Scripts for NeSI HPC training workshop
kakapo_gbs
Referenced-based SNP calling & population genomics.
KGD
Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
methylKit
R package for DNA methylation analysis
nanopolish
Signal-level algorithms for MinION data
yasfoster's Repositories
yasfoster/kakapo_gbs
Referenced-based SNP calling & population genomics.
yasfoster/AgIn
Process SMRT sequencing kinetic summary to predict regional methylation on large genome
yasfoster/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
yasfoster/DevNet
The DevNet project on github stores the PacBio DevNet website.
yasfoster/gepard
Genome Pair Rapid Dotter
yasfoster/hierfstat
the hierfstat package
yasfoster/hpc_training
Scripts for NeSI HPC training workshop
yasfoster/KGD
Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
yasfoster/methylKit
R package for DNA methylation analysis
yasfoster/nanopolish
Signal-level algorithms for MinION data
yasfoster/sheep_ID
Genomic analysis of inbreeding depression in Soay sheep
yasfoster/studyGroup
yasfoster/zool-coding-group
This repository relates to the content of our Zoology coding sessions