Pinned Repositories
1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
AADRB
AADR Browser
aDNA_WDL
Ancient DNA WDL Pipeline
ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
ATLAS-Docker
Docker image for ATLAS, the Analysis Tools for Low coverage and Ancient Samples
metaphlan2-docker
Docker image for the metaphlan2 package
VCF-RefChange
Coverts VCF files from one reference to another.
yassineS's Repositories
yassineS/ATLAS-Docker
Docker image for ATLAS, the Analysis Tools for Low coverage and Ancient Samples
yassineS/metaphlan2-docker
Docker image for the metaphlan2 package
yassineS/1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
yassineS/AADRB
AADR Browser
yassineS/aDNA_WDL
Ancient DNA WDL Pipeline
yassineS/ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
yassineS/BIOINF-3010-7150
yassineS/brew
:beer: The missing package manager for OS X
yassineS/COSMOS-2.0
Python Workflow and Pipeline Management System
yassineS/DemographicCourseAdelaide2018
yassineS/dockerised
A collection of dockerised tools.
yassineS/dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
yassineS/dog_recombination
Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome
yassineS/EstherBot
A clone of Smooch's example bot, with a couple of little tweaks. Once you follow the README instructions all you need to do is tweak the file script.json (which is the script for your bot to follow). Those commands control your bot. Have fun! :)
yassineS/fast-pipeline-for-admixture-mapping
A fast pipeline for running Tractor analysis
yassineS/genozip.github.io
genozip website
yassineS/giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
yassineS/GK2.0
GenomeKey for COSMOS 2.0 (deprecated)
yassineS/HTSkey
a COSMOS 2.0 pipeline for massively parallel HTS data processing
yassineS/mediator
a medium inspired jekyll theme
yassineS/mfaa_generalconf.github.io
Modern Jekyll based blog for companies
yassineS/MFAA_GeneralConf_2016.github.io
A simple material theme for blogger
yassineS/MSMCandMSMC2
yassineS/nf-demux
yassineS/ORNA-Docker
A docker container for ORNA
yassineS/streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
yassineS/tiny-test-data
Super small biological datasets for unit testing
yassineS/unbiaskey
Bias free variant calling pipeline for COSMOS
yassineS/yassine.github.io
fastpages-based blog
yassineS/yassines.github.io
Jekyll blog