Pinned Repositories
darwin
Darwin: A co-processor for long read alignment
Darwin-WGA
Co-processor for whole genome alignment
hcoErosions
SegAlign
A Scalable GPU System for Pairwise Whole Genome Alignments
shasta
De novo assembly from Oxford Nanopore reads.
strain_phylogenetics
Tools for analyzing and comparing SARS-CoV-2 phylogenies
usher
Ultrafast Sample Placement on Existing Trees
yatisht's Repositories
yatisht/usher
Ultrafast Sample Placement on Existing Trees
yatisht/darwin
Darwin: A co-processor for long read alignment
yatisht/strain_phylogenetics
Tools for analyzing and comparing SARS-CoV-2 phylogenies
yatisht/hcoErosions
yatisht/Darwin-WGA
Co-processor for whole genome alignment
yatisht/shasta
De novo assembly from Oxford Nanopore reads.
yatisht/SegAlign
A Scalable GPU System for Pairwise Whole Genome Alignments
yatisht/aws-fpga
Official repository of the AWS EC2 FPGA Hardware and Software Development Kit
yatisht/bioconda-recipes
Conda recipes for the bioconda channel.
yatisht/coursera-sdaccel-theory
Source codes used during the Coursera course titled "Developing FPGA-accelerated cloud applications with SDAccel: Theory"
yatisht/coveme
Docker environment for COVEME
yatisht/cppbestpractices
Collaborative Collection of C++ Best Practices
yatisht/dozeu
SIMD-parallel BLAST X-drop DP on sequence graphs
yatisht/gprof2dot
Converts profiling output to a dot graph.
yatisht/hal
Hierarchical Alignment Format
yatisht/kent
UCSC Genome Browser source tree. Stable branch: "beta".
yatisht/kubernetes
Various snippets and tooling to use a kubernetes cluster
yatisht/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
yatisht/pycogent
PyCogent: Official repository for software and unit tests
yatisht/riscv-boom
SonicBOOM: The Berkeley Out-of-Order Machine
yatisht/VEME2021
yatisht/vim
yatisht/Vitis-HLS-Introductory-Examples