Pinned Repositories
Algorithm
Algorithm
bioconda-recipes
Conda recipes for the bioconda channel.
blockchain_guide
Introduce blockchain related technologies, from theory to practice with bitcoin, ethereum and hyperledger.
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持自定义函数插件，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python/C++/Go项目树剖析功能/项目源代码自译解能力，新增PDF和Word文献批量总结功能
Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
deSALT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
Psi-caller
a lightweight short read-based variant caller with high speed and accuracy
rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
SKSV
ultrafast structural variation detection from circular consensus sequencing reads
ydLiu-HIT's Repositories
ydLiu-HIT/deSALT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
ydLiu-HIT/SKSV
ultrafast structural variation detection from circular consensus sequencing reads
ydLiu-HIT/Psi-caller
a lightweight short read-based variant caller with high speed and accuracy
ydLiu-HIT/rMETL
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
ydLiu-HIT/Algorithm
Algorithm
ydLiu-HIT/bioconda-recipes
Conda recipes for the bioconda channel.
ydLiu-HIT/blockchain_guide
Introduce blockchain related technologies, from theory to practice with bitcoin, ethereum and hyperledger.
ydLiu-HIT/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
ydLiu-HIT/chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持自定义函数插件，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python/C++/Go项目树剖析功能/项目源代码自译解能力，新增PDF和Word文献批量总结功能
ydLiu-HIT/Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
ydLiu-HIT/ClaraGenomicsAnalysis
SDK for GPU accelerated genome assembly and analysis
ydLiu-HIT/cuteSV
Long read based human genomic structural variation detection with cuteSV
ydLiu-HIT/DeepSV
Calling deletions using deep convolutional neural
ydLiu-HIT/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
ydLiu-HIT/FreeHiC
FreeHi-C pipeline for high fidelity Hi-C data simulation.
ydLiu-HIT/gatk
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
ydLiu-HIT/LAMSA
Long Approximate Matches-based Split Aligner
ydLiu-HIT/memusg
A 'time'-like utility for Unix that measures peak memory usage
ydLiu-HIT/MintReading
English reading everyday
ydLiu-HIT/msaSINDEL
small variants detection based on multiple sequence alignment
ydLiu-HIT/nucleus
Python and C++ code for reading and writing genomics data.
ydLiu-HIT/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
ydLiu-HIT/pubLRasm
ydLiu-HIT/README
README文件语法解读，即Github Flavored Markdown语法介绍
ydLiu-HIT/RNAseqEval
A tool for evaluating RNA seq mapping
ydLiu-HIT/Sniffles
Structural variation caller using third generation sequencing
ydLiu-HIT/SQANTI2
Private repo for Liz's modified SQANTI
ydLiu-HIT/ssw_aligner
Python implementation of Striped Smith-Waterman Algorithm
ydLiu-HIT/sv-benchmark
Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data