ydavidchen
Senior Data Scientist in Software Development | Researcher & Teaching Faculty in Biomedical Data Science
San Francisco Bay Area
Pinned Repositories
bariatric-sat-profiling
Gene expression analysis of subcutaneous adipose tissue (SAT) exposed to bariatric weight-loss surgery
cd4t_pilot_signature
Classical machine learning of CD4T abundance with gene expression to develop anti-viral response signatures
CellLine2CmdLine
Cell Line to Command Line: Tools for Bioinformatics & Biomedical Data Science
DeepLearning3
Multitarget detection of attributes from animal images (deep learning challenge final submission)
gcp-mle-outline
Cheatsheet for studying/review the Professional Machine Learning Engineer Certification exam topics
heartfailure-microarray-dge
Global and gene-level meta profiling of left ventricles
ki67-pilot-signature
Identification and downstream analysis of a Ki-67 related transcriptomic signature
lgg_multiclass
Multiclass prediction of lower-grade glioma subtypes via gene promoter CpG island profiles
vatican
Award-winning Analysis Platform Using Blockchain and Deep Learning
ydavidchen's Repositories
ydavidchen/gcp-mle-outline
Cheatsheet for studying/review the Professional Machine Learning Engineer Certification exam topics
ydavidchen/CellLine2CmdLine
Cell Line to Command Line: Tools for Bioinformatics & Biomedical Data Science
ydavidchen/vatican
Award-winning Analysis Platform Using Blockchain and Deep Learning
ydavidchen/Guide-Bot
Misty Robotics skill that detects barrier and provides feedback to blind individuals (DeveloperWeekNYC final submission)
ydavidchen/Healthy_Lung_Epigenetics
R code repository for healthy lung DNA methylation project [published work]
ydavidchen/machine-learning-engineer-portfolio
Machine Learning Engineer Udacity Project Portfolio
ydavidchen/TAF7L_in_Cancer
Candidate gene-level analysis: Is TAF7L a tumor suppressor?
ydavidchen/bariatric-sat-profiling
Gene expression analysis of subcutaneous adipose tissue (SAT) exposed to bariatric weight-loss surgery
ydavidchen/BRCA1-like_analyses
Downstream analysis code for multi-laboratory collaboration: "Molecular profiling of BRCA1-like receptor-positive tumors" (accepted manuscript)
ydavidchen/cd4t_pilot_signature
Classical machine learning of CD4T abundance with gene expression to develop anti-viral response signatures
ydavidchen/DeepLearning3
Multitarget detection of attributes from animal images (deep learning challenge final submission)
ydavidchen/heartfailure-microarray-dge
Global and gene-level meta profiling of left ventricles
ydavidchen/ki67-pilot-signature
Identification and downstream analysis of a Ki-67 related transcriptomic signature
ydavidchen/lgg_multiclass
Multiclass prediction of lower-grade glioma subtypes via gene promoter CpG island profiles
ydavidchen/machine-learning-id-of-tnbc
Machine learing identification of triple negative breast cancer | Healthcare-related Project in partial fulfillment of the Udacity Machine Learning Engineering Nanodegree Program
ydavidchen/Biostatistics-Consulting-Projects
Biostatistical consulting at Dartmouth-Hitchcock Medical Center (completed/published projects only)
ydavidchen/Concordance_in_DCIS_DNAm
Code for the manuscript titled: Concordance of DNA methylation profiles between breast core biopsy and surgical excision specimens containing ductal carcinoma in situ (DCIS) (PMID28711544)
ydavidchen/fastqEngine
Get quality scores and expression values from RNA-seq experiment with just few clicks
ydavidchen/fgaomics
Machine and Deep Learning of Analysis of Transcriptomics in relation to Genomic Burdens
ydavidchen/glance
Website for Dartmouth 2019 Android Smartphone App (awarded Best 2019 Project)
ydavidchen/imaterialist.challenge.io
iMaterialist 2020 Computer Vision Challenge
ydavidchen/InfiniumPurifyUpdated
InfiniumPurify package with 2023 Update
ydavidchen/iOS_developer_portfolio
Udacity iOS Developer Nanodegree Project Portfolio
ydavidchen/my-leetcode-journey
Solving programming challenges on LeetCode daily...for leisure
ydavidchen/pytorch_dl_challenge
Udacity PyTorch Deep Learning Challenge
ydavidchen/vadesc
A probabilistic model to cluster survival data in a variational deep clustering setting