Pinned Repositories
Cas9_chromosome_loss_scRNA-seq
demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
demuxlet_paper_code
Supplementary code for generating some of the figures presented in the demuxlet paper
ImmunoX_hack
Instructions for setting up environment for scRNA-seq analysis
lupus_1M_cells_clean
popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
scito
Python/C packade for SCITO-seq analysis in Jupyter notebooks
SCITO-seq_Manuscript
SCITO-seq manuscript related
scrna-parameter-estimation
Direct estimation of mean and covariance from single cell RNA seq experiments
spatial
spatial sequencing project @ Ye lab
Yelab @ UCSF's Repositories
yelabucsf/scrna-parameter-estimation
Direct estimation of mean and covariance from single cell RNA seq experiments
yelabucsf/SCITO-seq_Manuscript
SCITO-seq manuscript related
yelabucsf/lupus_1M_cells_clean
yelabucsf/demuxlet_paper_code
Supplementary code for generating some of the figures presented in the demuxlet paper
yelabucsf/Cas9_chromosome_loss_scRNA-seq
yelabucsf/demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
yelabucsf/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
yelabucsf/spatial
spatial sequencing project @ Ye lab
yelabucsf/ImmunoX_hack
Instructions for setting up environment for scRNA-seq analysis
yelabucsf/obesity_scrnaseq
yelabucsf/scito
Python/C packade for SCITO-seq analysis in Jupyter notebooks
yelabucsf/cd4_atac_rna_seq_paper_code
Figure Scripts for ATAC-seq/RNA-seq in activated CD4s from 100 samples.
yelabucsf/clue
Analysis code for the clue framework paper: efficient pooled single-cell sequencing without reference genotypes.
yelabucsf/dna-xformers-yelab
DNA sequence modeling using transformers and deep learning approaches
yelabucsf/sceQTL
yelabucsf/SKG_rheum