Large-Scale Multi-Class Image-Based Cell Classification with Deep Learning MIT Licence

Tensorflow implementation of "Large-scale Multi-class Image-based Cell Classification with Deep Learning" by Nan M., Edmund Y. L., Tsia K. M., Hayden K-H. So. [Paper]

Project page

https://monaen.github.io/Large-Scale-Multi-Class-Image-Based-Cell-Classification-with-Deep-Learning

Environment

  • Ubuntu 14.04/16.04
  • Python 2.7
  • Note: for Windows Users you need to download the dataset and unzip to the "data" folder.

Code

We provide the training and test code at: https://github.com/monaen/Large-Scale-Multi-Class-Image-Based-Cell-Classification-with-Deep-Learning/tree/code

Dataset

We provide three different datasets, and all the datasets could be downloaded at https://github.com/monaen/Large-Scale-Multi-Class-Image-Based-Cell-Classification-with-Deep-Learning/tree/data

  • download the small data
git clone https://github.com/monaen/Large-Scale-Multi-Class-Image-Based-Cell-Classification-with-Deep-Learning
.git --branch code --single-branch
cd Meng2018Largescale/data
./download_small_Train_Test_Valid.sh
  • download the large data
./download_large_Train_Test_Valid.sh
  • download the augmented data
./download_augmented_Train_Test_Valid.sh
  • run the demo
python demo.py

Details

The entire code project contains many recent deep learning models for cell classification. We implement these models according to their papers and integrate them into our project.

If you want to use our data or code please cite our paper properly.

Reference

Data

@data{h2qw97-18,
  doi = {10.21227/H2QW97},
  url = {http://dx.doi.org/10.21227/H2QW97},
  author = {Meng, Nan and Lam, Edmund and Tsia, Kevin Kin Man and So, Hayden Kwok-Hay},
  publisher = {IEEE Dataport},
  title = {Human somatic label-free bright-field cell images},
  year = {2018}
}

Paper

@article{Meng2018Largescale,
  title = {Large-scale Multi-class Image-based Cell Classification with Deep Learning},
  author = {Meng, Nan and Lam, Edmund and Tsia, Kevin Kin Man and So, Hayden Kwok-Hay},
  journal = {IEEE journal of biomedical and health informatics},
  year = {2018},
  publisher = {IEEE}
}

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