Pinned Repositories
biomed_genai
Generative AI data curation and model patterns that take advantage of publicly available BioMedical articles.
c4-bert
With Veronika Deketova
CCDC
Algorithm developed for Continuous Change Detection and Classification (CCDC) of land cover using all available Landsat data.
chemBioViz
Data integration and visualization tool taking in chemical structures and bioassays for chemical risk assessment (CBRA) for publication
confounderControl
Code for paper on automating propensity scores. Comparing high-dimensional confounder control methods for rapid cohort studies from electronic health records
mysql
Re-usable MySQL functions for phenotyping and generating patient cohorts
nCoV2019
COVID-19 line list realtime download, processing and analysis
retain-keras
Reimplementation of RETAIN Recurrent Neural Network in Keras
twitterpandemicindex
Pandemic index calculated from 200M coronavirus tweets. Submission for 2020 Lumiata COVID-19 hackathon https://devpost.com/software/tweet-pandemic-index
utils
Frequently used utility functions (for APIs/PhD/postdoc chem/clinical informatics)
yenlow's Repositories
yenlow/twitterpandemicindex
Pandemic index calculated from 200M coronavirus tweets. Submission for 2020 Lumiata COVID-19 hackathon https://devpost.com/software/tweet-pandemic-index
yenlow/retain-keras
Reimplementation of RETAIN Recurrent Neural Network in Keras
yenlow/confounderControl
Code for paper on automating propensity scores. Comparing high-dimensional confounder control methods for rapid cohort studies from electronic health records
yenlow/nCoV2019
COVID-19 line list realtime download, processing and analysis
yenlow/utils
Frequently used utility functions (for APIs/PhD/postdoc chem/clinical informatics)
yenlow/biomed_genai
Generative AI data curation and model patterns that take advantage of publicly available BioMedical articles.
yenlow/c4-bert
With Veronika Deketova
yenlow/CCDC
Algorithm developed for Continuous Change Detection and Classification (CCDC) of land cover using all available Landsat data.
yenlow/Clinical-Trial-Parser
Library for converting clinical trial eligibility criteria to a machine-readable format.
yenlow/CohortMethod
[Under development] An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
yenlow/contoso-chat
RAG promptflow workshop
yenlow/coronaprep
Dynamic topic modeling of tweets on coronavirus preparation
yenlow/coursera_dl
programming assignments as part of Coursera Deeplearning.ai
yenlow/Cyclops
[Under development] Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
yenlow/eat
yenlow/emailNetwork
visualize the email exchanges among the senior management staff of enron
yenlow/fastai
The fastai deep learning library, plus lessons and and tutorials
yenlow/genesis_wb_chem
yenlow/harvesting-tools
A collection of code snippets designed to be dropped into the data harvesting process directly after generating the zip starter kit
yenlow/howsmybaby
Summarize, instead of reading all forum pages of moms with babies born in the same month as yours
yenlow/KnowledgeBase
Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.
yenlow/llm-foundry
LLM training code for Databricks foundation models
yenlow/mosaic_examples
Fast and flexible reference benchmarks
yenlow/NextBestStore
Next Best Store predictor for Insight Data Science fellowship
yenlow/opeanai-cookbook
yenlow/scratch
yenlow/SMMT
Social Media Mining Toolkit (SMMT) main repository
yenlow/TweetData
Lumiata COVID-19 Global AI Hackathon
yenlow/user2020-metaflow-tutorial
Tutorial contents for useR! 2020 Metaflow workshop
yenlow/wineclassifier
Predicts wines one would most likely drink using Tensorflow's Wide and Deep Learning on Wine Enthusiast's reviews on 130k wines