Pinned Repositories
af-homology
Alignment free homology tools
classiwhale
Social news filtering.
datagoo
Open source power logging using Arduino+GSM.
django-hunger
Django app for managing beta signups and invitations
django-icanhaz
Embed icanhaz.js templates into Django templates with minimal fuss.
django-jenkins
Plug and play continuous integration with django and jenkins
django-mailer
mail queuing and management for the Django web framework
metax_bakeoff_2019
rosalind
Project Rosalind Solutions
snakemake-cluster
Running snakemake on a UGE cluster
yesimon's Repositories
yesimon/metax_bakeoff_2019
yesimon/dotfiles
Config files for shell
yesimon/ART
ART simulator
yesimon/Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
yesimon/BEAR
A Better Sequencing Simulator for Metagenomics
yesimon/bioconda-recipes
Conda recipes for the bioconda channel.
yesimon/bioconda-utils
Utilities for building and managing bioconda recipes
yesimon/blastutil
yesimon/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
yesimon/cdhit
Automatically exported from code.google.com/p/cdhit
yesimon/contra
yesimon/diamond
Accelerated BLAST compatible local sequence aligner.
yesimon/dx-toolkit
DNAnexus platform client libraries
yesimon/gemtools
GEMTools main repository
yesimon/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
yesimon/kraken
Kraken taxonomic sequence classification system
yesimon/kraken2
The second version of the Kraken taxonomic sequence classification system
yesimon/krakenuniq
🐙 Metagenomics classifier with unique k-mer counting for more specific results
yesimon/myoaav_capsid
yesimon/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
yesimon/ncbitax
NCBI Taxonomy
yesimon/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
yesimon/RAPSearch2
Reduced Alphabet based Protein similarity Search
yesimon/seaborn
Statistical data visualization using matplotlib
yesimon/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
yesimon/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
yesimon/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
yesimon/surpi
SURPI
yesimon/viral-ngs
Viral genomics analysis pipelines
yesimon/viral-ngs-deploy
Deployment files related to https://github.com/broadinstitute/viral-ngs