Pinned Repositories
archived_external_resources
Archived external programs. None of the stuff here is developed by me so please refer to the original sources.
bb-seq-analysis
Barebone sequencing analysis pipelines
DEnMX2
Drosophila Environment Monitor X2
edgeCounter
Counting edges of BAM alignment against a GRanges object
gsAnalysis
Miscellaneous tools for genomic sequence analysis. Part of the y3628 suite.
ijAnalysis
Miscellaneous tools for image analysis tasks. Part of the y3628 suite.
markdown_images
This repo stores markdown file reference images
motifAnalysisExports
Browsable motif analysis results (Bioinformatics)
pub_ATAC_2024
Code for publication "Clock-dependent chromatin accessibility rhythms regulate circadian transcription"
punctaTracker
A general ImageJ2 Jython plugin for "puncta analysis"
yeyuan98's Repositories
yeyuan98/punctaTracker
A general ImageJ2 Jython plugin for "puncta analysis"
yeyuan98/archived_external_resources
Archived external programs. None of the stuff here is developed by me so please refer to the original sources.
yeyuan98/bb-seq-analysis
Barebone sequencing analysis pipelines
yeyuan98/DEnMX2
Drosophila Environment Monitor X2
yeyuan98/edgeCounter
Counting edges of BAM alignment against a GRanges object
yeyuan98/gsAnalysis
Miscellaneous tools for genomic sequence analysis. Part of the y3628 suite.
yeyuan98/ijAnalysis
Miscellaneous tools for image analysis tasks. Part of the y3628 suite.
yeyuan98/markdown_images
This repo stores markdown file reference images
yeyuan98/motifAnalysisExports
Browsable motif analysis results (Bioinformatics)
yeyuan98/pub_ATAC_2024
Code for publication "Clock-dependent chromatin accessibility rhythms regulate circadian transcription"
yeyuan98/Rabe
Adenine base editor analysis. Part of the y3628 suite.
yeyuan98/rna_fish_analysis
RNA-FISH analysis snakemake workflow
yeyuan98/RNAseq
Script and final analyzed data for RNA sequencing experiment
yeyuan98/smk_RNA_FISH
RNA FISH Analysis workflow
yeyuan98/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
yeyuan98/ucsc_trackhubs
UCSC trackhubs
yeyuan98/y3628
Core package of the y3628 suite of R analysis tools