yfz-96

Pinned Repositories

crossRanger
Language:R00
dynamic-meta-storms
Dynamic Meta-Storms calculates comprehensive taxonomic and phylogenetic distances/dissimilarities of shotgun metagenomes at the species level.
Language:C++00
ECC
Language:R00
hrms
R package for making the kernel functions of calculating the microbiome distances and principle coordinates.
Language:C++00
meta-apo
Meta-Apo (Metagenomic Apochromat) calibrates the predicted gene profiles from 16S-amplicon sequences using an optimized machine-learning based algorithm and a small number of paired WGS-amplicon samples as model training, thus produces diversity patterns that are much more consistent between amplicon- and WGS-based strategies.
Language:C++00
meta-storms
Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software repository of Meta-Storms 2.
Language:C++00
ORPI
Language:R00
parallel-meta
A High Performance Microbiome Analysis Toolkit.
Language:C++00
q2-metastorms
This is the official repository of QIIME 2 plugin for Meta-Storms 2.
Language:Python00
ratio
The ratios between the relative abundance of human and bacterial DNA
Language:R00

yfz-96's Repositories

yfz-96/crossRanger
Language:R00
yfz-96/dynamic-meta-storms
Dynamic Meta-Storms calculates comprehensive taxonomic and phylogenetic distances/dissimilarities of shotgun metagenomes at the species level.
Language:C++00
yfz-96/ECC
Language:R00
yfz-96/hrms
R package for making the kernel functions of calculating the microbiome distances and principle coordinates.
Language:C++00
yfz-96/meta-apo
Meta-Apo (Metagenomic Apochromat) calibrates the predicted gene profiles from 16S-amplicon sequences using an optimized machine-learning based algorithm and a small number of paired WGS-amplicon samples as model training, thus produces diversity patterns that are much more consistent between amplicon- and WGS-based strategies.
Language:C++00
yfz-96/meta-storms
Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software repository of Meta-Storms 2.
Language:C++00
yfz-96/ORPI
Language:R00
yfz-96/parallel-meta
A High Performance Microbiome Analysis Toolkit.
Language:C++00
yfz-96/q2-metastorms
This is the official repository of QIIME 2 plugin for Meta-Storms 2.
Language:Python00
yfz-96/ratio
The ratios between the relative abundance of human and bacterial DNA
Language:R00
yfz-96/starter-hugo-academic
Language:Jupyter Notebook
yfz-96/strain2bfunc
yfz-96/Strain2bFunc_manuscript