yhren1993/3DPhaseContrastAET

This repository contains code and datasets used in the following paper:

3D Phase Contrast Atomic Electron Tomography

This repository contains the code for algorithm introduced in the following paper

A multiple scattering algorithm for three dimensional phase contrast atomic electron tomography

David Ren*, Colin Ophus*, Michael Chen and Laura Waller (* Authors contributed equally).

Contents

1. Usage
2. Data
3. Updates
4. FAQ

Usage

0. Install required dependencies Arrayfire and contexttimer.
1. Clone this repo: git clone https://github.com/yhren1993/3DPhaseContrastAET.git
2. Copy measurement data into data/measurement/

Data

All simulated measurements, reconstructed volumes, and tracing results can be found in README under data/measurement/, data/reconstruction/, and data/atomtrace/, respectively.

Updates

10/22/2018:

1. Added first version of code to repo. Same as those used in the paper.

10/29/2018:

1. Added links to data location

01/25/2019:

1. Fixed an issue for using TV on CPU

FAQ