/tcga_bc_tools

Data processing tools for TCGA BRCA

Primary LanguagePython

tcga_bc_tools

Data processing tools for TCGA BRCA

rnatable_tcga

Tools for processing TCGA BRCA RNA-seq Level 3 data

  • contains a class: rnatable
  • TCGA barcode processing and cleaning
  • Patient/gene/TF selecting and cleaning
  • Computing gene correlation
  • Example in rnatable_tcga/rnatable_func.py