yi-zhang
Assistant Professor @ Duke #computational biology #machine learning #cancer genomics
Duke UniversityDurham, NC
yi-zhang's Stars
theislab/single-cell-transformer-papers
asntech/pyjaspar
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
gv20-therapeutics/IGSF8-NK
This repository contains the scripts to reproduce the figures for our paper titled 'IGSF8 is an Innate Immune Checkpoint and Cancer Immunotherapy Target'
Moldia/Xenium_benchmarking
Code used to benchmark Xenium
JackieHanLab/TOSICA
Transformer for One-Stop Interpretable Cell-type Annotation
dmcable/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
daviddaiweizhang/istar
atong01/MultiscaleEMD
Multiscale earth mover's distance methods for tree and manifold structured data
BayraktarLab/cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
WubingZhang/MHCI_TRAF3
Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade
vals/Blog
mourisl/heatmapannot
Add color heatmap to seaborn heatmaps
mourisl/chromap
Fast alignment and preprocessing of chromatin profiles
liulab-dfci/TRUST4
TCR and BCR assembly from RNA-seq data
yi-zhang/MetaTiMEpretrain
Pipeline for meta-components calling from scRNA datasets
tiroshlab/Spatial_Glioma
Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
bowang-lab/scGPT
yi-zhang/MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
pepkit/geofetch
Builds a PEP from SRA or GEO accessions
AllenWLynch/CODA-reproduction
haowenz/chromap
Fast alignment and preprocessing of chromatin profiles
vallotlab/benchmark_scepigenomics
kenjihiranabe/The-Art-of-Linear-Algebra
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
dair-ai/ML-Course-Notes
🎓 Sharing machine learning course / lecture notes.
wheaton5/souporcell
Clustering scRNAseq by genotypes
chanzuckerberg/cellxgene-documentation
Documentation for the cellxgene product
popgenmethods/lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
theislab/sfaira
data and model repository for single-cell data
lilab-bcb/harmony-pytorch
akcarsten/Independent_Component_Analysis
From scratch Python implementation of the fast ICA algorithm.