Pinned Repositories
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
cruk-summer-school-2018
Summer school course materials collection
How-to-be-a-good-programmer
I'm here to tell you some amazing stuff which teacher would never tell you.
HTPmod-shinyApp
A Shiny Application for Modeling and Visualization of Large-Scale Biological Data
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
scKB
Use kallisto and bustools to call the gene-cell matrix for both spliced and unspliced transcripts of scRNA-seq
Training-modules
Materials for short, half-day workshops
yichangyu's Repositories
yichangyu/Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
yichangyu/scKB
Use kallisto and bustools to call the gene-cell matrix for both spliced and unspliced transcripts of scRNA-seq
yichangyu/Training-modules
Materials for short, half-day workshops
yichangyu/bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
yichangyu/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
yichangyu/COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
yichangyu/cruk-summer-school-2018
Summer school course materials collection
yichangyu/How-to-be-a-good-programmer
I'm here to tell you some amazing stuff which teacher would never tell you.
yichangyu/HTPmod-shinyApp
A Shiny Application for Modeling and Visualization of Large-Scale Biological Data
yichangyu/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
yichangyu/Intro-to-ChIPseq
Intro to ChIPseq using HPC
yichangyu/IsoSeq
IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
yichangyu/NECorr
yichangyu/ohmyzsh
🙃 A delightful community-driven (with 1500+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
yichangyu/plantGRNs
Integration of genome-wide TF binding and expression data to characterize plant gene regulatory networks
yichangyu/scRNA-seq
yichangyu/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
yichangyu/test_rstudio
yichangyu/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities