yichaoS/knowledgesystems-k8s-deployment

Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes

Kubernetes deployment of Knowledge Systems Apps

This repo contains all the kubernetes configuration files needed to run the Knowledge System Group Apps on Kubernetes. For a schematic overview see:

https://docs.google.com/presentation/d/1mnSnSZRDJmX0vv8ZF_lNQvX2sz73deKia8w5S9YciR8/

Create Kubernetes cluster on Amazon using Kops

See: kops/README.md

Initialize the Kubernetes cluster

Helm Package Manager

We use helm to deploy several services. Set up helm with Role-based access control:

https://github.com/kubernetes/helm/blob/master/docs/rbac.md#role-based-access-control

Knowledge Systems Group Apps

• cBioPortal
• Genome Nexus
• OncoKB

Routing of Domain Names

We use nginx ingress to handle the routing to the services. See ingress/README.md.

Monitoring

We use Prometheus for monitoring our apps. See monitoring/README.md.