Pinned Repositories
VirusFriends
VirusFriends: discover viral sequences in the NCBI Sequence Read Archive!
01
anvio
Aaron
snakemake for Aaron's projects
Achromophages
frap
FRAP-tools
Fragment Recruitment plots from FRAP
getaddons
Get extra regions in contigs assembly
getholes
Get regions with no coverage in a reference genome
phamut
Find mutations in a phage/viral genome
ViromicsWorkshop
Viromics workshop
yinacobian's Repositories
yinacobian/frap
yinacobian/FRAP-tools
Fragment Recruitment plots from FRAP
yinacobian/Aaron
snakemake for Aaron's projects
yinacobian/bacteria-genome-annotation-phages
Annotation of bacteria genomes from a phage perspective
yinacobian/getaddons
Get extra regions in contigs assembly
yinacobian/getholes
Get regions with no coverage in a reference genome
yinacobian/phamut
Find mutations in a phage/viral genome
yinacobian/ViromicsWorkshop
Viromics workshop
yinacobian/CF032_PT
Data analysis for CF032 case study
yinacobian/CFRR
Cystic Fibrosis Rapid Response analysis pipeline
yinacobian/cheesecake-phage
Phage genomes annotation workshop August 2023
yinacobian/COVID19
Data analysis for Marisa Roja's project of environmental distribution of SARS-Cov-2
yinacobian/cute-hostrange-tables
How to make pretty host range tables
yinacobian/FRAP-basic
yinacobian/FRAP-example
Simple FRAP example
yinacobian/frap-heh
FRAP implementation using hash exact hit
yinacobian/FRAPperformance
FRAP benchmarking
yinacobian/FREP-grep
FRAP implementation using grep
yinacobian/Global-Virome
Material from Cobian et al. 2016, "Viruses as winners in the game of life"
yinacobian/ML-SLI
yinacobian/modaLISA
yinacobian/modELISA
Analysis of modified ELISA
yinacobian/modELISA-S
Screening for viral antibodies in saliva samples, using a modified ELISA with viral antigens
yinacobian/MR-blastx
aa database and SRA hits
yinacobian/newlabsetup
yinacobian/reads-vs-NT
How to blast each read or contig vs NT and get tables by species
yinacobian/readstools
yinacobian/RecipeCards
Lab recipes
yinacobian/SRAsearch-to-info
Tools to explore SRA Search results
yinacobian/use-circulaline
Use of circulaline software