Pinned Repositories
2018_scWorkshop
customized-upset-plots
Make customized upset plots: from raw data to plots
drop_it_like_its_hot_r
Compilation of R heatmap functions.
intePareto
Prioritize genes with consistent changes in RNA-Seq and ChIP-Seq data of different histone modifications betweeen different conditions using Pareto optimization
Online-R-learning
Online R learning project for advanced undergrads during the COVID-19 pandemic
r-intermediate
An intermediate level course on the R statistical programming language
rethinking-brms-ggplot2
Book reading: Statistical Rethinking with brms, ggplot2, and the tidyverse
Single-Cell-Open-Problems
Formalizing and benchmarking open problems in single-cell genomics
TIMEP
YouTubeTutorials
yingstat's Repositories
yingstat/Single-Cell-Open-Problems
Formalizing and benchmarking open problems in single-cell genomics
yingstat/TIMEP
yingstat/YouTubeTutorials
yingstat/drop_it_like_its_hot_r
Compilation of R heatmap functions.
yingstat/Pipeline-of-Epigenome
yingstat/Pipeline-of-transcriptome
The pipeline of transcriptome analysis
yingstat/beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
yingstat/bedtools2
bedtools - the swiss army knife for genome arithmetic
yingstat/COVID-19_Lung_Atlas
yingstat/covid19_respiratory_microbiome
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
yingstat/IgDiscover
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
yingstat/LearningNotes
yingstat/Liver_sc_sn_paper_scripts
yingstat/LiverMap2.0
yingstat/LiverTumouroids
yingstat/LiverTumouroidsScripts
yingstat/luca
Single-cell Lung Cancer Atlas with 1.2M cells
yingstat/MachineLearningFromScratch
Implementation of a few machine learning algorithms. From the ebook by Daniel Friedman.
yingstat/rt-from-frequency-dynamics
yingstat/scRNA_NB_comparison
Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"
yingstat/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
yingstat/scRNAseq-cell-type
yingstat/shiny_cell_browser
Shiny browser for single cell RNAseq data
yingstat/single-cell_sib_scilifelab_2021
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
yingstat/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
yingstat/Tumor-Immune-Cell-Atlas
Code repository for the Tumor Immune Cell Atlas (TICA) project
yingstat/TumouroidProject
yingstat/workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
yingstat/workshop-RNAseq
Workshop • Analysis of RNA-seq data
yingstat/workshop_omics_integration
Workshop in omics integration and systems biology