Pinned Repositories
3DC-Browser
3D genome viewer
cell_type_db
cellmesh
MeSH-based cell type querying
mouse_cell_query
split-seq-pipeline
split_seq_analysis
uncurl_analysis
analysis tools for use with uncurl
uncurl_app
uncurl_python
UNCURL is a tool for single cell RNA-seq data analysis.
yjzhang's Repositories
yjzhang/split-seq-pipeline
yjzhang/uncurl_python
UNCURL is a tool for single cell RNA-seq data analysis.
yjzhang/uncurl_app
yjzhang/cell_type_db
yjzhang/split_seq_analysis
yjzhang/cellmesh
MeSH-based cell type querying
yjzhang/mouse_cell_query
yjzhang/cellmarker_python
yjzhang/uncurl_analysis
analysis tools for use with uncurl
yjzhang/uncurl_net
yjzhang/bacillus_subtilis_tools
yjzhang/BigGIM
yjzhang/biobert
BioBERT: a pre-trained biomedical language representation model
yjzhang/BNMPy
yjzhang/combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
yjzhang/gene_name_mapper
yjzhang/gssnng
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
yjzhang/igraph-steiner-tree
yjzhang/Kalman-and-Bayesian-Filters-in-Python
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
yjzhang/kegg_query
yjzhang/KG_API
yjzhang/kg_feature_engineering
Using knowledge graphs for feature engineering
yjzhang/meshgraph
yjzhang/missingpy
Missing Data Imputation for Python
yjzhang/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
yjzhang/pairwiseMKL
pairwiseMKL package
yjzhang/POT
POT : Python Optimal Transport
yjzhang/t2d_models
yjzhang/ti_uncurl_linear
yjzhang/uncurl-app-data