yk-tanigawa
Yosuke Tanigawa is a Postdoctoral Associate at MIT Computational Biology Lab (PI: Prof. Manolis Kellis).
MITCambridge, MA, U.S.A.
Pinned Repositories
biods215.github.io
Home page for class github repository
ANGPTL7
Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma
covid19
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
public-resources
Repository for resources we'd like to share with the community.
snpnet
snpnet - Efficient Lasso Solver for Large-scale genetic variant data
docker-ensembl-vep-loftee
fujiplot
:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:
yk-tanigawa.github.io
GitHub pages repository for my personal website, forked from https://academicpages.github.io
yk-tanigawa's Repositories
yk-tanigawa/fujiplot
:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:
yk-tanigawa/docker-ensembl-vep-loftee
yk-tanigawa/yk-tanigawa.github.io
GitHub pages repository for my personal website, forked from https://academicpages.github.io
yk-tanigawa/docker-RGT
yk-tanigawa/201505_utbs_seminar
yk-tanigawa/201506_gpgpu_test
yk-tanigawa/array-job-template
yk-tanigawa/bh18-biobank-to-HPO
yk-tanigawa/bh18-transcription-factor
yk-tanigawa/containers
Bioinformatics containers
yk-tanigawa/cs228-notes
Course notes for CS228: Probabilistic Graphical Models.
yk-tanigawa/CWL-workflows
Workflows written in common workflow language (CWL)
yk-tanigawa/docker-bundler
Ruby Bundler Docker images
yk-tanigawa/docker-circos
yk-tanigawa/docker-inkscape
yk-tanigawa/docker-jupyter
Yosuke's personal Docker image for the Jupyter notebook environment
yk-tanigawa/docker-LDSC
A Dockerlized version of LDSC
yk-tanigawa/docker-meme-suite
:whale: :computer: Docker recipe for meme-suite
yk-tanigawa/docker-whisper.cpp
yk-tanigawa/enrichr_py
yk-tanigawa/evoker-lite
Evoker Lite is a python tool to generate cluster plots (PNG/PDF files) given a set of PLINK + intensity files. Compatible with UK Biobank v2 data.
yk-tanigawa/inkscape
Docker image for Inkscape
yk-tanigawa/jupyter-remote
yk-tanigawa/mrp
Repo for MRP method.
yk-tanigawa/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
yk-tanigawa/plotly-examples
yk-tanigawa/rocker-ultra
Containerised RStudio with bells+whistles for HPC and everywhere
yk-tanigawa/snpnet-fork-2019
yk-tanigawa/yt_misc_py
Yosuke's misc functions (Python)
yk-tanigawa/zstd
Zstandard - Fast real-time compression algorithm