yoakiyama

MIT EECS PhD student in https://www.solab.org/

Massachusetts Institute of Technology

Pinned Repositories

SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
Language:Python77 10 3721
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
Language:Python00
ARDLoRa
LoRA fine-tuning with automatic relevance determination
Language:Jupyter Notebook10
CRALL-Programming-Language
Language:F#0 1 00
esm
Language:Python00
hack_esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Language:Python0 0 00
hello-world
Introduction to Github
0 1 00
MIT_6_C85_portfolio
Language:Jupyter Notebook0 1 00
WAVE
Language:Assembly1 1 00
zoning-dashboard-fp
Language:Jupyter Notebook1 3 10

yoakiyama's Repositories

yoakiyama/WAVE
Language:Assembly1 1 00
yoakiyama/zoning-dashboard-fp
Language:Jupyter Notebook1 3 10
yoakiyama/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
Language:Python00
yoakiyama/CRALL-Programming-Language
Language:F#0 1 00
yoakiyama/esm
Language:Python00
yoakiyama/hack_esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Language:Python0 0 00
yoakiyama/hello-world
Introduction to Github
0 1 00
yoakiyama/MIT_6_C85_portfolio
Language:Jupyter Notebook0 1 00
yoakiyama/mutational_signatures_utils
Utility and plotting functions for mutational signature analysis
0 2 00
yoakiyama/tensorqtl
Ultrafast GPU-based QTL mapper
Language:Python0 1 00
yoakiyama/yoakiyama.github.io
Personal academic website
Language:JavaScript0 0 01
yoakiyama/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python