Pinned Repositories
ABCD_geneticQC
app-ants-mni
ANTs transformation and tractogram registration in MNI space, using as the reference template the MNI152 T1 at 1.25 mm. WARNING: all the given inputs should be in the same anatomical space.
arter
code for brain arteriolosclerosis GWAS
Bethlehem_et_al_Normative_Modeling
bias
bits of software for manipulating and analysing brain images in the nifti format
brainAgeR
R package for brain age
brainiak-tutorials
Tutorials that cover topics from basics to advanced fMRI analysis
brainsmash
Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
broomExtra
Helpers for regression analyses using `{broom}` & `{easystats}` packages 📈 🔍
Brown_et_al_Neuron_2019
yoaman's Repositories
yoaman/ABCD_geneticQC
yoaman/arter
code for brain arteriolosclerosis GWAS
yoaman/brainsmash
Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
yoaman/broomExtra
Helpers for regression analyses using `{broom}` & `{easystats}` packages 📈 🔍
yoaman/C-PAC
Configurable Pipeline for the Analysis of Connectomes
yoaman/cerebellar_atlases
yoaman/CLEAN
R package for CLEAN, CLEAN-R, and CLEAN-V
yoaman/DGPA_workshop_2022
The repository for the ReproNim "Reproducible Neuroimaging" workshop, organized and conducted for the DGPA in spring 2022.
yoaman/GenomicScores
Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome
yoaman/ggsflabel
Labels for 'sf' with 'ggplot2'
yoaman/HD-BET
MRI brain extraction tool
yoaman/hla-prs-toolkit
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp (S.sharp@exeter.ac.uk).
yoaman/IMMerge
Tool to merge VCF genotype files at scale
yoaman/imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
yoaman/introduction-to-datascience
Open Source Textbook for DSCI100: Introduction to Data Science in R
yoaman/MS_for_proteomics_tutorial
Repository for a tutorial on analysing MS data in R
yoaman/NDD_risk_variant_clustering
Analysis of GWAS-significant SNPs across NDDs
yoaman/NMRI225
code to run NMRI225 template construction
yoaman/PLINKLiftOver
Perform liftover on plink files
yoaman/postImpute
Post imputation QC and processing of Michigan Imputation Server Jobs
yoaman/PRS-Tutorial
A tutorial on how to run basic polygenic risk score analysis
yoaman/qt6ct
Qt6 Configuration Tool
yoaman/quarto-web
Quarto website
yoaman/R-tutorials
A collection of R tutorials that I created and archived.
yoaman/rformassspectrometry
R for Mass Spectrometry documentation
yoaman/rNuggets
A package with helper functions essentially for my personal use - but others might find some of them helpful
yoaman/rstudio
RStudio is an integrated development environment (IDE) for R
yoaman/SynthSeg
Contrast-agnostic segmentation of MRI scans
yoaman/TOPMED_Imputation_Scripts
Scripts and functions for pre and post-imputation from TOPMED (https://imputation.biodatacatalyst.nhlbi.nih.gov/#!) and Michigan imputation servers
yoaman/whisper
Robust Speech Recognition via Large-Scale Weak Supervision