yohm/sim_evo_social_norms

Prerequisites

• cmake
• OpenMP
• MPI
• Eigen3
• nlohmann-json

Install these prerequisites by homebrew if you are on macOS.

brew install cmake
brew install libomp
brew install open-mpi
brew install eigen
brew install nlohmann-json

Build

Clone the repository with submodules.

git clone --recursive git@github.com:yohm/sim_evo_social_norms.git
cd sim_evo_social_norms

Make a build directory and run cmake.

mkdir cmake-build-debug
cd cmake-build-debug
cmake ..
cmake --build .

If you want to build in release mode, run cmake with -DCMAKE_BUILD_TYPE=Release option.

mkdir cmake-build-release
cd cmake-build-release
cmake -DCMAKE_BUILD_TYPE=Release ..
cmake --build .

Executables

• main_calc_fixation_probs: Calculate all the fixation probabilities between a set of social norms.
• main_well_mixed_evo: Calculate the stationary distribution of evolutionary process in well-mixed populations.
• main_grouped_evo_ODE: Calculate the stationary distribution of evolutionary process in group-structured populations using ODE in the M-infinity limit.
• main_grouped_evo_MC: Calculate the stationary distribution of evolutionary process in group-structured populations using Monte Carlo simulation with finite M.
• main_fix_probs_param_dep: Calculate the fixation probability between two species for different sigma & benefit.
• inspect_Norm, inspect_PublicRepGame, inspect_PrivRepGame, inspect_EvolPrivRepGame, inspect_GroupedEvo: Print the details of an instance of each class.
• msgpack2json: Convert a msgpack file to a json file.
• extract_2nd_order_msgpack: Extract the fixation probabilities of the second order norms from an output msgpack file of main_calc_fixation_probs.

Tests

Unit tests are prepared. The executables that starts with test_ are the unit tests. Run these tests using ctest command.

cd cmake-build-debug
ctest

Scripts

• fugaku_build_calc_fixation_probs.sh: Build main_calc_fixation_probs on Fugaku.
• fugaku_job
  • fugaku_job.sh: A sample job script for Fugaku.
  • params.json: A sample parameter file for Fugaku.
• script
  • evo_three_species: scripts for the three-species evolutionary simulations.
  • evo_well_mixed: scripts for the evolutionary simulations in well-mixed populations.
  • evo_grouped_ODE: scripts for the evolutionary simulations in grouped-structured populations using ODE
  • evo_grouped_MC: scripts for the evolutionary simulations in grouped-structured populations using Monte Carlo simulation