yoshihikosuzuki

UTokyo

Pinned Repositories

ant-asm-workflow
Genome assembly workflow with HiFi + Omni-C
Language:Shell1 3 61
bits
BITS: miscellaneous BioInformatics ToolS
Language:Python2 2 00
CentromereAssembly
[Obsolete] Trying to assemble centromere sequences (of Drosophila for now; hopefully any species in the future)
Language:Python1 2 00
ClassPro
A K-mer classifier for HiFi reads
Language:C8 5 60
complex-sat-asm
Complex Satellite Sequence Assembly with PacBio HiFi reads
Language:Python1 2 00
FASTK_python
Python interface for FASTK (currently Histex and Profex)
Language:C0 2 00
install-scripts
Personal collection of scripts for installing Lmod modules
Language:Shell3 1 00
kmer-profile
Scripts for kmer profile analysis
Language:Python2 2 00
make_telomere_bed
Make a .bed file for telomeres in a contig/scaffold file
Language:Python00
plotly_light
A python Plotly wrapper aiming for lightweight plots
Language:Python0 2 00

yoshihikosuzuki's Repositories

yoshihikosuzuki/ClassPro
A K-mer classifier for HiFi reads
Language:C8 5 60
yoshihikosuzuki/install-scripts
Personal collection of scripts for installing Lmod modules
Language:Shell3 1 00
yoshihikosuzuki/bits
BITS: miscellaneous BioInformatics ToolS
Language:Python2 2 00
yoshihikosuzuki/kmer-profile
Scripts for kmer profile analysis
Language:Python2 2 00
yoshihikosuzuki/ant-asm-workflow
Genome assembly workflow with HiFi + Omni-C
Language:Shell1 3 61
yoshihikosuzuki/CentromereAssembly
[Obsolete] Trying to assemble centromere sequences (of Drosophila for now; hopefully any species in the future)
Language:Python1 2 00
yoshihikosuzuki/complex-sat-asm
Complex Satellite Sequence Assembly with PacBio HiFi reads
Language:Python1 2 00
yoshihikosuzuki/ContigChecker
A tool for checking circularity and correctness of contigs
Language:Python1 2 10
yoshihikosuzuki/DAVIEWER
DAVIEWER for compatibility with Qt6
Language:C1 1 0
yoshihikosuzuki/gepard
Genome Pair Rapid Dotter
Language:Java1 0 0
yoshihikosuzuki/FASTK_python
Python interface for FASTK (currently Histex and Profex)
Language:C0 2 00
yoshihikosuzuki/make_telomere_bed
Make a .bed file for telomeres in a contig/scaffold file
Language:Python00
yoshihikosuzuki/plotly_light
A python Plotly wrapper aiming for lightweight plots
Language:Python0 2 00
yoshihikosuzuki/BioinfoUgrp
OIST Bioinfo user group
Language:Shell
yoshihikosuzuki/canu
A single molecule sequence assembler for genomes large and small.
Language:C++1 0
yoshihikosuzuki/DAMASKER
Forked from https://github.com/thegenemyers/DAMASKER
Language:C2 0
yoshihikosuzuki/Falcon2Fastg
Tidied Falcon2Fastg (https://github.com/md5sam/Falcon2Fastg) for python3
Language:Python2 0
yoshihikosuzuki/FASTK_tools
Developmental codes for ClassPro
Language:C
yoshihikosuzuki/jtk
JTK -- a targeted diploid genome assembler
yoshihikosuzuki/my-dipasm
Custom DipAsm
Language:Shell
yoshihikosuzuki/ntHash
Fast hash function for DNA sequences
Language:C++
yoshihikosuzuki/PaperMap
Graphical Application for Paper Survey Management
Language:JavaScript2 0
yoshihikosuzuki/PaperMapVue
PaperMap with Vue.js
Language:JavaScript2 0
yoshihikosuzuki/PaperSorter
A proof-of-concept paper management application with Electron + React + Redux
Language:JavaScript2 0
yoshihikosuzuki/pb_metagenome
Codes for PacBio metagenome analyses
Language:Python2 0
yoshihikosuzuki/pbcore
pbcore for python3. Forked from https://github.com/PacificBiosciences/pbcore
Language:Python2 0
yoshihikosuzuki/purge_tips
Remove reads mapped to low-cov contigs (deemed contamination, etc.) using a GFA file
Language:Shell
yoshihikosuzuki/purge_tips_smk
Snakemake version of purge_tips
Language:Python1 0
yoshihikosuzuki/sdust
Symmetric DUST for finding low-complexity regions in DNA sequences
Language:C
yoshihikosuzuki/snakeproc
Procedural Snakemake: An experimental template usage of snakemake for more intuitive workflows
Language:Shell