Pinned Repositories
CancerDrivers
Detection of cancer drivers.
comut
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
CrowdAnalytix
Competitions hosted on Crowd analytix
DiffExp
Review of differential expression analysis methods.
EbiUhlmann
Repository for my project in Uhlmann's lab.
facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
forester
An R package for creating publication-ready forest plots.
KaggleHumanProtein
MVAClasses
Homeworks
tableExtra
Extension of `gridExtra` R package to make awesome tables.
ypradat's Repositories
ypradat/tableExtra
Extension of `gridExtra` R package to make awesome tables.
ypradat/comut
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
ypradat/CancerDrivers
Detection of cancer drivers.
ypradat/CrowdAnalytix
Competitions hosted on Crowd analytix
ypradat/DiffExp
Review of differential expression analysis methods.
ypradat/EbiUhlmann
Repository for my project in Uhlmann's lab.
ypradat/facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
ypradat/forester
An R package for creating publication-ready forest plots.
ypradat/KaggleHumanProtein
ypradat/MVAClasses
Homeworks
ypradat/CivicAnnotator
Performs an annotation of mutations, copy-number or fusions events seen in tumour samples using the CIViC database.
ypradat/home_dotfiles
Dotfiles under version control
ypradat/PrettyPy
A repository for cool python plots I often use.
ypradat/sigprofilerjulia
ypradat/snakemake-executor-plugin-slurm-gustave-roussy
Snakemake plugin executor with special values for GUstave Roussy's Flamingo
ypradat/snakemake_slurm_profile
Snakemake profile for slurm
ypradat/TCGA_Facets
Snakemake pipeline for running FACETS on all WXS TCGA samples.
ypradat/UpdateGeneIdentifiers
Python tool for converting between gene ids and for updating HGNC symbols.
ypradat/VariantAnnotator
Code for annotation VCF files with Variant Ensembl Predictor and manual annotation.
ypradat/VariantNMF
Julia implementations of different types of NMF algorithms.
ypradat/vim-apptainer-syntax
Vim syntax highlighting for Apptainer files