Pinned Repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bioanaly
Tools for Molecular Dynamics (MD) trajectory analysis. These tools enable us to analyse data sets from AmberTools16 in more detail.
comset
Simple scripts to set up something for computational approaches, such as MD simulations, MC calculations, and machine learning techniques.
dnn
Deep neural network frameworks for ~. Under construction :construction:
flow-based-model
Flow-based deep generative model for molecular conformations.
GPR-tutorial
Basic implementation of gaussian process regression (GPR). In this case, we predict the free energy landscape as a function of dihedral angles of biomolecules.
KernelPCA-tutorial
Basic implementation of kernel principal component analysis (PCA). In this case, kernel PCA was performed on the datasets of dihedral angles of biomolecules.
make-mdmovie
Make a MD movie.
md-alanine-dipeptide
Data set of molecular dynamics (MD) simulations of an alanine dipeptide.
note
My notebook to remember what I have learned about coding and scientific knowledge.
ytachigo's Repositories
ytachigo/flow-based-model
Flow-based deep generative model for molecular conformations.
ytachigo/KernelPCA-tutorial
Basic implementation of kernel principal component analysis (PCA). In this case, kernel PCA was performed on the datasets of dihedral angles of biomolecules.
ytachigo/md-alanine-dipeptide
Data set of molecular dynamics (MD) simulations of an alanine dipeptide.
ytachigo/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
ytachigo/bioanaly
Tools for Molecular Dynamics (MD) trajectory analysis. These tools enable us to analyse data sets from AmberTools16 in more detail.
ytachigo/comset
Simple scripts to set up something for computational approaches, such as MD simulations, MC calculations, and machine learning techniques.
ytachigo/dnn
Deep neural network frameworks for ~. Under construction :construction:
ytachigo/GPR-tutorial
Basic implementation of gaussian process regression (GPR). In this case, we predict the free energy landscape as a function of dihedral angles of biomolecules.
ytachigo/make-mdmovie
Make a MD movie.
ytachigo/note
My notebook to remember what I have learned about coding and scientific knowledge.
ytachigo/pymbar
Cloned repository of pymbar. It provides MBAR (multistate Bennett acceptance ratio) analyses for uncorrelated data sets.
ytachigo/Resampling-tutorial
Basic implementation of resampling methods.
ytachigo/tex-template
LaTeX template in Japanese.
ytachigo/vpython
Animations related to physics (e.g. classical mechanics and statical mechanics) by VPython.
ytachigo/wordcloud
Make a wordcloud from PDF files.
ytachigo/ytachigo.github.io