yuanlizhanshi

awesome-shiny-extensions

🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

DeepLearning_Summary

A list of awesome Deep Learning tutorials, projects and communities. Forked from other github repositories.

DNA-methylation-analysis

DNA methylation analysis notes from Ming Tang

EPInformer

code to run EPInformer for gene expression prediction and gene-enhancer links prioritization

Genome-annotation-pipeline

Genome annotation

my_shiny_apps

Some Web tools

NGS_Workflow

Some NGS workflow created by snakemake

Silkworm_whole_transcriptome

Code for whole transcriptome analysis

yuanlizhanshi/NGS_Workflow

Some NGS workflow created by snakemake

yuanlizhanshi/ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

yuanlizhanshi/my_shiny_apps

Some Web tools

yuanlizhanshi/Silkworm_whole_transcriptome

Code for whole transcriptome analysis

yuanlizhanshi/awesome-shiny-extensions

🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny

yuanlizhanshi/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

yuanlizhanshi/DeepLearning_Summary

A list of awesome Deep Learning tutorials, projects and communities. Forked from other github repositories.

yuanlizhanshi/DNA-methylation-analysis

DNA methylation analysis notes from Ming Tang

yuanlizhanshi/EPInformer

code to run EPInformer for gene expression prediction and gene-enhancer links prioritization

yuanlizhanshi/Genome-annotation-pipeline

Genome annotation

yuanlizhanshi/getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

yuanlizhanshi/hic-pipeline

yuanlizhanshi/Islet_ML

The reproducible code for the Islet ML paper

yuanlizhanshi/lab

yuanlizhanshi/ML-NLP

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

yuanlizhanshi/omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

yuanlizhanshi/RNA-seq-analysis

RNAseq analysis notes from Ming Tang

yuanlizhanshi/sunbeam

A robust, extensible metagenomics pipeline

yuanlizhanshi/Termite_transcriptome

Code for termite_transcriptome paper