yuchen345

yuchen345's Stars

• Mcdull8/METArisk

  Codes for METArisk

  Language:R74

• saezlab/visium_heart

  Spatial transcriptomics of heart tissue

  Language:Jupyter Notebook7035

• JWarmenhoven/ISLR-python

  An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code

  Language:Jupyter Notebook4.2k2.4k

• ans4013/ScisorWiz

  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data

  Language:Python142

• funkyheatmap/funkyheatmap

  Visualising data frames as funky heatmaps 📊

  Language:R15710

• ucagenomix/sicelore-2.1

  Language:Java132

• stianlagstad/chimeraviz

  chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

  Language:R3614

• jwasham/coding-interview-university

  A complete computer science study plan to become a software engineer.

  303k76.1k

• lbcb-sci/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

  Language:C++19634

• noush-joglekar/sn-code

  Language:R62

• Oshlack/JAFFA

  JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

  Language:C++8121

• epi2me-labs/wf-single-cell

  Language:Python6833

• ddbourgin/numpy-ml

  Machine learning, in numpy

  Language:Python15.2k3.7k

• youqiongye/CRC_scRNAseq

  Language:R4123

• ConesaLab/TCR_nextflow

  Language:Nextflow102

• QuKunLab/SpatialBenchmarking

  Language:Jupyter Notebook10726

• KCCG/rageseq

  RAGE-seq scripts

  Language:Perl173

• fgheng/vime

  vime, an easy and structural config for (neo)vim users

  Language:Vim script40877

• czbiohub-sf/scell_lung_adenocarcinoma

  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

  Language:HTML14289

• Teichlab/celltypist

  A tool for semi-automatic cell type classification

  Language:Python27441

• ZhaiLab-SUSTech/snuupy

  single-nucleus nanopore reads processing pipeline

  Language:Python157

• FavioVazquez/ds-cheatsheets

  List of Data Science Cheatsheets to rule the world

  14.4k3.8k

• yyq123/learn-vim

  无废话极简版Vim学习笔记！文章按主题分拆为多个章节，并尽量控制每节的信息量；通过文字色彩和字体，将命令、快捷键突出显示；在每节结尾，提供一个命令列表，以便回顾文中介绍的重要命令。如果这些文章能对喜欢Vim的朋友有所益处，我将不胜荣幸。

  Language:HTML18026

• hopehealey/scISOseq_processing

  Scripts to process

  Language:Python21

• sirselim/jetson_nanopore_sequencing

  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

  10611

• openwdl/wdl

  Workflow Description Language - Specification and Implementations

  761307

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala987356

• SchulzLab/Aeron

  Alignment, quantification and fusion prediction from long RNA reads

  Language:Python108

• gpertea/stringtie

  Transcript assembly and quantification for RNA-Seq

  Language:C++36577

• gpertea/gffcompare

  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

  Language:C++19732