/mstle_figure_code

Primary LanguageMATLABMIT LicenseMIT

mstle_figure_code

This repository includes raw data with MATLAB codes to regenerate main and supplementary figures of the article: Takeuchi Y et al., Closed-loop stimulation of the medial septum terminates epileptic seizures. Brain 144 (3): 885–908. 27 Jan 2021.

Getting Started

Prerequisites

The codes have been tested with MATLAB ver 9.5 (R2018b) with the following toolboxes:

  • Curve Fitting Toolbox
  • Data Acquisition Toolbox
  • Image Acquisition Toolbox
  • Image Processing Toolbox
  • Signal Processing Toolbox
  • Statistics and Machine Learning Toolbox
  • Wavelet Toolbox

Installing

  1. Install MATLAB.
  2. Clone MatlabUtils in the \code\lib directory as a submodule.
  3. Clone logshadedErrorBar in the \code\helper directory as a submodule.

How to use

  1. Launch main functions for respective figures in the \code directory.
  2. Each figure panel will appear in the \results directory.

Versioning

We use SemVer for versioning.

Authors

  • Yuichi Takeuchi PhD - Initial work - GitHub
  • Affiliation: Department of Physiology, University of Szeged, Hungary

License

This project is licensed under the MIT License.

Acknowledgments

References

  • Takeuchi Y, Harangozó M, Pedraza L, Földi T, Kozák G, Li Q, Berényi A, Closed-loop stimulation of the medial septum terminates epileptic seizures. Brain 144 (3): 885–908. 27 Jan 2021. DOI: https://doi.org/10.1093/brain/awaa450