Pinned Repositories
acme
A library of reinforcement learning components and agents
AITemplate
AITemplate is a Python framework which renders neural network into high performance CUDA/HIP C++ code. Specialized for FP16 TensorCore (NVIDIA GPU) and MatrixCore (AMD GPU) inference.
awesome-equivariant-network
Paper list for equivariant neural network
DeepSpeed
DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.
e3nn
A modular framework for neural networks with Euclidean symmetry
egnn-pytorch
Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch
equifold
Official code repository for EquiFold
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
evotorch
EvoTorch is an advanced evolutionary computation library built directly on top of PyTorch, created at NNAISENSE.
stable-baselines3
PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.
yunda-si's Repositories
yunda-si/stable-baselines3
PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.
yunda-si/acme
A library of reinforcement learning components and agents
yunda-si/AITemplate
AITemplate is a Python framework which renders neural network into high performance CUDA/HIP C++ code. Specialized for FP16 TensorCore (NVIDIA GPU) and MatrixCore (AMD GPU) inference.
yunda-si/awesome-equivariant-network
Paper list for equivariant neural network
yunda-si/DeepSpeed
DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.
yunda-si/e3nn
A modular framework for neural networks with Euclidean symmetry
yunda-si/egnn-pytorch
Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch
yunda-si/equifold
Official code repository for EquiFold
yunda-si/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
yunda-si/evotorch
EvoTorch is an advanced evolutionary computation library built directly on top of PyTorch, created at NNAISENSE.
yunda-si/foldingdiff
Diffusion models of protein structure; trigonometry and attention are all you need!
yunda-si/geometric-vector-perceptron
Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021
yunda-si/GNN_PPI
Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
yunda-si/GPU-Puzzles
Solve puzzles. Learn CUDA.
yunda-si/gym
A toolkit for developing and comparing reinforcement learning algorithms.
yunda-si/hexo-theme-butterfly
🦋 A Hexo Theme: Butterfly
yunda-si/latexify_py
Generates LaTeX math description from Python functions.
yunda-si/MAgent2
An engine for high performance multi-agent environments with very large numbers of agents, along with a set of reference environments
yunda-si/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
yunda-si/meltingpot
A suite of test scenarios for multi-agent reinforcement learning.
yunda-si/mujoco
Multi-Joint dynamics with Contact. A general purpose physics simulator.
yunda-si/neurips19-graph-protein-design
Generative Models for Graph-Based Protein Design
yunda-si/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
yunda-si/physical_concepts
yunda-si/progen
Official release of the ProGen models
yunda-si/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
yunda-si/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
yunda-si/sidechainnet
An all-atom protein structure dataset for machine learning.
yunda-si/test
test
yunda-si/yunda-si
Config files for my GitHub profile.