yunguan-wang

Pinned Repositories

awesome-quant
A curated list of insanely awesome libraries, packages and resources for Quants (Quantitative Finance)
0 1 00
bokeh
Interactive Data Visualization in the browser, from Python
Language:Python00
cb_sniffer
mutation(barcode) caller for 10x single cell data
Language:Python0 1 00
concat-docker
An example of using Docker and Docker compose in our semi-standardised pipeline
Language:Python00
cycif-clustering
Cell state calling docker app for cycif data
Language:Python0 1 00
QBRC_BulkRnaSeqDE
Language:Python1 3 02
Spacia
Language:Jupyter Notebook22 3 42
SPROD
SPROD: Spatial expression profiling de-noising
Language:Python33 6 154
Tissue_positioning_system
A quantitative, unsupervised algorithm for hapatocytes zonal expression analysis
Language:Python4 2 02

yunguan-wang's Repositories

yunguan-wang/SPROD
SPROD: Spatial expression profiling de-noising
Language:Python33 6 154
yunguan-wang/Tissue_positioning_system
A quantitative, unsupervised algorithm for hapatocytes zonal expression analysis
Language:Python4 2 02
yunguan-wang/QBRC_BulkRnaSeqDE
Language:Python1 3 02
yunguan-wang/awesome-quant
A curated list of insanely awesome libraries, packages and resources for Quants (Quantitative Finance)
0 1 00
yunguan-wang/bokeh
Interactive Data Visualization in the browser, from Python
Language:Python00
yunguan-wang/cb_sniffer
mutation(barcode) caller for 10x single cell data
Language:Python0 1 00
yunguan-wang/cycif_analysis_suite
A collection of tools for analysis of segmented single-cell cycif data.
Language:Jupyter Notebook0 1 01
yunguan-wang/deepdow
Portfolio optimization with deep learning.
yunguan-wang/DrugResponse
Analysis of drug response based on cell staining
Language:MATLAB1 0
yunguan-wang/FinQuant
A program for financial portfolio management, analysis and optimisation.
Language:Python1 0
yunguan-wang/histoCAT
Histology Topography Cytometry Analysis Toolbox
Language:MATLAB1 0
yunguan-wang/hms-lincs-tma
Analysis scripts for the tissue based Cycif data.
Language:Jupyter Notebook
yunguan-wang/indra_pathway_map
Language:JavaScript
yunguan-wang/Intro-to-ChIPseq
Intro to ChIPseq using HPC
yunguan-wang/kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Language:Jupyter Notebook1 0
yunguan-wang/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Language:Python1 0
yunguan-wang/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python1 0
yunguan-wang/Nature_cancer_paper_2022
Code deposit for figures in manuscript
Language:Python
yunguan-wang/neuroc
Neuroconductor Content
Language:HTML1 0
yunguan-wang/pysashimi
Pure python scripts to make sashimi plots
Language:Python1 0
yunguan-wang/python-ternary
:small_red_triangle: Ternary plotting library for python with matplotlib
Language:Python1 0
yunguan-wang/QBRC-Neoantigen-Pipeline
Neoantigen calling pipeline with CSiN calculation embedded
Language:Perl1 0
yunguan-wang/QBRC-Somatic-Pipeline
Somatic mutation calling pipeline
Language:Perl1 01
yunguan-wang/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language:Python
yunguan-wang/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
Language:Nextflow1 0
yunguan-wang/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python1 0
yunguan-wang/SCINA
SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
yunguan-wang/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
1 01
yunguan-wang/seaborn
Statistical data visualization using matplotlib
Language:Python1 0
yunguan-wang/Syncrip_paper_2022
Language:Python