Pinned Repositories
celligrate
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
FRmatch
Cell type matching in single-cell RNA-sequencing data using FR-Match
NSForest
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
FR-Match_demo_data
FUNNEL-GSEA-R-Package
Zhang et al. 2017. FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. Bioinformatics, 33(13), 1944-1952.
GTEx_batch_effect_2015
Working repository for the GTEx/batch-effect/network project.
gtexAnalysis
PBtest-R-Package
Zhang et al. 2019. Highly Efficient Hypothesis Testing Methods for Regression-type Tests with Correlated Observations and Heterogeneous Variance Structure. BMC Bioinformatics, 20:185.
rGTExNetwork
Final Project for BST 550 (Fall 2015)
simDeNet-R-Package-Shiny
Zhang et al. 2021. The effect of tissue composition on gene co-expression, Briefings in Bioinformatics, 22(1), 127-139.
yunzhang813's Repositories
yunzhang813/FUNNEL-GSEA-R-Package
Zhang et al. 2017. FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. Bioinformatics, 33(13), 1944-1952.
yunzhang813/PBtest-R-Package
Zhang et al. 2019. Highly Efficient Hypothesis Testing Methods for Regression-type Tests with Correlated Observations and Heterogeneous Variance Structure. BMC Bioinformatics, 20:185.
yunzhang813/simDeNet-R-Package-Shiny
Zhang et al. 2021. The effect of tissue composition on gene co-expression, Briefings in Bioinformatics, 22(1), 127-139.
yunzhang813/rGTExNetwork
Final Project for BST 550 (Fall 2015)
yunzhang813/FR-Match_demo_data
yunzhang813/GTEx_batch_effect_2015
Working repository for the GTEx/batch-effect/network project.
yunzhang813/gtexAnalysis
yunzhang813/HVP-Innovation-Award-2019
Reporting page of the HVP Innovation Award 2019
yunzhang813/JCVI-Biostats
JCVI Biostatistics Lunch and Learn Seminar - 2018/2019
yunzhang813/JCVI-IU-code-sharing
yunzhang813/mnmr
yunzhang813/NSForest
yunzhang813/SpaceTx-cell-type-calling
SpaceTx Mouse V1 cell type calling with scRNAseq by FR-Match
yunzhang813/SpaceTx-scRNAseq
The goal of this repository is to collect data that will be used to support the mapping of cell types identified in spatial transcriptomics experiments with cell types previously identified in single cell and single nucleus RNAseq experiments.