Genetic code expansion reveals aminoacylated lysine ubiquitination mediated by UBE2W. Jia Zang, Yulin Chen, Chao Liu, Linzhen Hu, Hongxia Zhao, Wenlong Ding, Ying Yuan & Shixian Lin. Nature Structural & Molecular Biology, volume 30, pages 62–71 (2023). https://www.nature.com/articles/s41594-022-00866-9
- Python 3.9.12
- NumPy 1.21.5
- pandas 1.4.2
- Thermo MSFileReader version 3.0 SP3 (https://thermo.flexnetoperations.com/control/thmo/search?query=MSFileReader)
- MSFileReader Package of Python (https://github.com/frallain/pymsfilereader)
- Visual Studio Code 1.67.2
Python was installed through Anaconda Navigator 2.1.4 (https://www.anaconda.com/)
MSFileReader Package was installed by pip3 install pymsfilereader
- R 4.2.0 -- "Vigorous Calisthenics"
- ggplot2 3.3.6
- limma 3.52.1
- pheatmap 1.0.12
- RStudio 2022.02.3+492 "Prairie Trillium" Release for Windows