/Moose_genomics

Moose population genomics

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Moose_genomics

Moose population genomics

This repository contains the code used in Dussex et al. (xxxx).

All data processing was performed using the Generode pipeline (https://github.com/NBISweden/GenErode) with defaults paramaters.

Data analysis was performed using custom codes which include:

  1. Data processing, heterozygosity, inbreeding, genetic load (Generode pipeline)

  2. population structure analysis (Admixture)

  3. demographic analyses (SMC++ anf GONE)

  4. Genome scans (ANGSD)