yuzhenpeng
comparative genomics, evolutionary biology of aging, and adaptive evolution
NANJING NORMAL UNIVERSITYJiangsu, China
Pinned Repositories
Al2PrunedTree
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
bio_tools
Useful bioinformatic scripts
biodiversity_genomics_course
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
bioscripts
several scripts for bioinformatics
cactus
Official home of genome aligner based upon notion of Cactus graphs
Centromere_synteny_project
How to identify genome-wide synteny with LASTZ alignment
GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
last-genome-alignments
Sequence-manipulation
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
yuzhenpeng.github.io
This is my blog files
yuzhenpeng's Repositories
yuzhenpeng/Angiosperm-karyotype-evolution
核型进化Angiosperm karyotype evolution
yuzhenpeng/Assembly_hifiasm_HiC-anchor_3ddna
yuzhenpeng/ASTRAL
Accurate Species TRee ALgorithm
yuzhenpeng/asynt
Genome alignment and synteny plots
yuzhenpeng/BioScripts-2
Collection of my bioinformatics scripts !
yuzhenpeng/cleaner_wrasse_genome
Labroides dimidiatus (Bluestreak cleaner wrasse)
yuzhenpeng/ColabFold
快速进行蛋白三维结构预测
yuzhenpeng/DGINN
获取直系同源基因序列、多序列比对
yuzhenpeng/dip-c
Tools to analyze Dip-C (or other 3C/Hi-C) data
yuzhenpeng/dysgu
dysgu-SV is a collection of tools for calling structural variants using short or long reads
yuzhenpeng/Finder
整合多个转录组基因结构注释
yuzhenpeng/Gene-Synteny-Analysis
MCscan 可视化
yuzhenpeng/hgtseq
水平基因转移
yuzhenpeng/killer_tools
Killer tools/packages/libraries/websits/...
yuzhenpeng/lep_fusion_fission_finder
A tool to assign ancestral linkage units and/or identify fusion/fission events in Lepidopteran chromosomes based on a set of reference BUSCO genes as markers.
yuzhenpeng/mcscanx-synteny-visualizer
可视化MCscanX Synteny Collinearity file
yuzhenpeng/miniprot
将蛋白序列快速比对到基因组
yuzhenpeng/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
yuzhenpeng/public_scripts
collection of bioinformatic scripts
yuzhenpeng/pyGenomeViz
A genome visualization python package for comparative genomics
yuzhenpeng/SegDupAnnotation
yuzhenpeng/ShinySyn
A shiny application to visualize MCscan result
yuzhenpeng/snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
yuzhenpeng/SVision
Detecting genome structural variants with deep learning in single molecule sequencing
yuzhenpeng/transanno
不同基因组版本坐标转换
yuzhenpeng/turtle-genomics
Web resources for the comparative turtle genomics project
yuzhenpeng/two-species-genome-comparison-pipeline
Two-species genome comparison pipeline (combines minimap2/SyRI, EDTA, bedtools) to identify structural variants (inv/syn), annotate TE, and plot results in R.
yuzhenpeng/useful_scripts
Collections of useful scripts that have been used multiple times
yuzhenpeng/wgdi
WGDI: 全基因组复制与祖先核型
yuzhenpeng/workshop-spatial
spatial omics course