Pinned Repositories
10x-scATAC-2019
Code Repository for Satpathy Granja et al 2019
19spring-lab
adipogenesis-methylation
💻 Analysis codes and bioinformatic pipelines for paper "Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation" (Park et al., Nature Metabolism. 2022)
admin-one-vue-tailwind
Free Vue.js 3.x Tailwind 3.x admin dashboard template with dark mode. Vite builds. Pinia state. Laravel integration available
Adv360-Pro-ZMK
Production repository for the all-new Advantage360 Professional using ZMK engine
Algorithm
astro_test
blog
snakemake_sra_download
yxian9's Repositories
yxian9/10x-scATAC-2019
Code Repository for Satpathy Granja et al 2019
yxian9/19spring-lab
yxian9/awesome-TCGA
Curated list of TCGA resources
yxian9/beditor
A computational workflow for designing libraries of guide RNAs for CRISPR base editing
yxian9/bedtools
A powerful toolset for genome arithmetic.
yxian9/bioinfo-training_additional-tutorial
yxian9/blogdown
Create Blogs and Websites with R Markdown
yxian9/Cell-Cell-interaction
Connectome analysis for Ligand-Receptor analysis for MuSC and endothelial cells
yxian9/cellSNP
Pile up bi-allelic SNPs from single-cell and bulk RNA-seq data
yxian9/genomicspapers
The Leek group guide to genomics papers
yxian9/hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
yxian9/HPC_Rscript
yxian9/jupyter-lab-study-note
My study notes of Jupyter Lab.
yxian9/lung-scrna
yxian9/perceptions
Perceptions of Probability and Numbers
yxian9/psychip_snakemake
yxian9/r4ds
R for data science
yxian9/R_Leng_1
yxian9/resume
Generate LaTeX and Markdown resume from YAML with Python.
yxian9/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
yxian9/ShinyCiona
Shiny app for our Ciona cardiopharyngeal specification single cell RNA-seq data
yxian9/single-cell-ciona
Single cell RNA-seq for Cardiopharyngeal Specification in Ciona
yxian9/snak_bulk_ATAC
yxian9/snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
yxian9/snakemake_RNAseq
yxian9/SnapATAC
Single Nucleus Analysis Pipeline for ATAC-seq
yxian9/snATAC
<<------ Use SnapATAC!!
yxian9/SVZ_NSC_Dulken_2
yxian9/tRic
tRNA in cancer
yxian9/UCSC-custom-track-generator
Script to automatically generate custom tracks to load on UCSC