Pinned Repositories
Actinobacteria_defense_systems
bacterial-genomics-tutorial
BUDDY
Bottom-up MS/MS interrogation & Experiment-specific global annotation
defense-finder-models
MacSyFinder models allowing for a systematic search of anti-phage systems
DLKcat
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
EMN001_Paleofuran
Repository for data, code & figures related to the publication: "Paleome reconstruction reveals Middle and Upper Paleolithic bacterial species and adds time axis in natural product discovery"
Grokking-Deep-Learning
this repository accompanies the book "Grokking Deep Learning"
iZH1845
Genome-scale metabolic model of Streptomyces atratus SCSIO ZH16NSA
transator-container
Container for PKS Predictor TransAtor
yzjie6's Repositories
yzjie6/defense-finder-models
MacSyFinder models allowing for a systematic search of anti-phage systems
yzjie6/transator-container
Container for PKS Predictor TransAtor
yzjie6/Actinobacteria_defense_systems
yzjie6/bacterial-genomics-tutorial
yzjie6/BUDDY
Bottom-up MS/MS interrogation & Experiment-specific global annotation
yzjie6/DLKcat
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
yzjie6/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
yzjie6/EMN001_Paleofuran
Repository for data, code & figures related to the publication: "Paleome reconstruction reveals Middle and Upper Paleolithic bacterial species and adds time axis in natural product discovery"
yzjie6/Grokking-Deep-Learning
this repository accompanies the book "Grokking Deep Learning"
yzjie6/iZH1845
Genome-scale metabolic model of Streptomyces atratus SCSIO ZH16NSA
yzjie6/KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
yzjie6/magpipe
yzjie6/Metaboseek
Interactive software to analyze and browse mass spectrometry data
yzjie6/ms2query
MS2Query - machine learning assisted library querying of MS/MS spectra
yzjie6/TaxiBGC
Taxonomy-guided Identification of Biosynthetic Gene Clusters
yzjie6/UUP-Finder
Unique Units Finder for microbial polyketides discovery
yzjie6/yzjie6
Config files for my GitHub profile.