Required Python Packages:
Install: python (version >= 3.5)
Install: sklearn (version >= 0.19.0)
Install: numpy (version >= 1.13.0)
Install: pandas (version >= 0.21.0)
Install: matplotlib (version >= 2.1.0)
Install: pickle
pip install < package name >
example: pip install sklearn
or
We can download from anaconda cloud.
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Features Extraction :
user@machine:~$ python extractionFeatures.py
Note #1: It will provide a dataset named fullDataset.csv from FASTA sequences. (fullDataset.csv)
Note #2: readXY.py ( This file will fetch data from hotSpot.fasta and coldSpot.fasta files. )
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Features Selection :
user@machine:~$ python selectionFeatures.py
Note #1: It will provide a dataset named selectedDataset.csv from fullDataset.csv.
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Training Model :
user@machine:~$ python modelDump