Pinned Repositories
AnthelminticInteractions-ms
BgeVars
Repository for analyzing Bge cell line variants
BrugiaChemo-ms
Companion scripts for Wheeler et al. 2020
Core_RNAseq-nf
Nextflow RNA-seq pipeline for WBP/VB species
Core_smRNAseq-nf
Nextflow smRNA-seq pipeline for WBP/VB species
DNAseq-VC-nf
RNAseq-VC-nf
Nextflow script for running a variant calling pipeline on RNA-seq data
wrmXpress
ZamanianLabDocs
ZamanianLabVSTools
A Set of Tools and Metrics for Analyzing and Evaluating Virtual Screening Data
ZamanianLab's Repositories
zamanianlab/ZamanianLabDocs
zamanianlab/BgeVars
Repository for analyzing Bge cell line variants
zamanianlab/BrugiaChemo-ms
Companion scripts for Wheeler et al. 2020
zamanianlab/wrmXpress
zamanianlab/ZamanianLabVSTools
A Set of Tools and Metrics for Analyzing and Evaluating Virtual Screening Data
zamanianlab/AnthelminticInteractions-ms
zamanianlab/AsELV_smRNAseq-nf
Small RNA-seq analysis for Ascaris ELV project
zamanianlab/BmalayiRNAseq-nf
Re-analysis of B. malayi public RNA-Seq data
zamanianlab/BmSC_shiny
Shiny app for exploring B. malayi microfilariae single-cell atlas.
zamanianlab/Bmsinglecell-ms
All the code and data necessary for reproducing analyses in Henthorn et al. 2022
zamanianlab/BrugiaSpatial-ms
This repository contains all the R, Bash and Python scripts necessary to reproduce the figures published in Airs et al 2022
zamanianlab/chtc-submit
Lab submit scripts to run jobs on CHTC @ UW-Madison
zamanianlab/Core_RNAseq-nf
Nextflow RNA-seq pipeline for WBP/VB species
zamanianlab/Core_scRNAseq
Collection of core lab scRNA-seq scripts
zamanianlab/Core_smRNAseq-nf
Nextflow smRNA-seq pipeline for WBP/VB species
zamanianlab/DNAseq-VC-nf
zamanianlab/Docker
Lab Dockerfiles to run jobs on CHTC @ UW-Madison
zamanianlab/RNAseq-VC-nf
Nextflow script for running a variant calling pipeline on RNA-seq data
zamanianlab/Bm-GAR-ms
zamanianlab/BrugiaMotilityAnalysis
Scripts to analyze videos of moving worms
zamanianlab/ChemoDevice-ms
zamanianlab/Filarid_IsoSeq-ms
Companion scripts for Wheeler et al. 2020
zamanianlab/LocalWBP
A collection of scrips for organizing a local version of WormBase ParaSite
zamanianlab/Mansonella-ms
zamanianlab/MultivariateScreening-ms
All the code and data necessary for reproducing analyses in Wheeler et al. 2022
zamanianlab/Phylogenetics
zamanianlab/polyAudit
All-in-one poly(A) tail analyses for long-read RNA sequencing data
zamanianlab/zamanianlab.github.io
Zamanian Lab website, University of Wisconsin-Madison
zamanianlab/ZamanianLabThemes
Plot themes used by Zamanian Lab members