Pinned Repositories
Benthos
A game of underwater intrigue
Coral_Disease_Datasets
Standardized Coral Disease Datasets for Metaanalysis
full_spectrum_bioinformatics
An open-access bioinformatics text
GCMP_Australia_Coevolution
Code and intermediate data files for the Global Coral Microbiome Project's Study of coral-microbe cophylogeny in Australia
GCMP_genomics
A repository for comparing coral innate immune gene profiles to Global Coral Microbiome Project datasets.
GCMP_Global_Disease
This project hold the workflow for the Global Coral Microbiome Project's global comparison of coral disease susceptibility and microbiome structure.
karenina
Simulation and modeling tools for studying Anna Karenina effects in animal microbiomes
organelle_removal
picrust
Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests
q2-karenina
QIIME2 plugin for the karenina package for modeling stochastic microbiome dynamics
zaneveld's Repositories
zaneveld/full_spectrum_bioinformatics
An open-access bioinformatics text
zaneveld/GCMP_Australia_Coevolution
Code and intermediate data files for the Global Coral Microbiome Project's Study of coral-microbe cophylogeny in Australia
zaneveld/GCMP_Global_Disease
This project hold the workflow for the Global Coral Microbiome Project's global comparison of coral disease susceptibility and microbiome structure.
zaneveld/karenina
Simulation and modeling tools for studying Anna Karenina effects in animal microbiomes
zaneveld/organelle_removal
zaneveld/Benthos
A game of underwater intrigue
zaneveld/GCMP_genomics
A repository for comparing coral innate immune gene profiles to Global Coral Microbiome Project datasets.
zaneveld/picrust
Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests
zaneveld/An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
zaneveld/computational_biology
Example GitHub repository for Computational Biology
zaneveld/Coral_Disease_Datasets
Standardized Coral Disease Datasets for Metaanalysis
zaneveld/q2-karenina
QIIME2 plugin for the karenina package for modeling stochastic microbiome dynamics
zaneveld/Demographics
scripts associated with analysis of student demographic data for UW Bothell
zaneveld/gcmp_analysis_2024
latest analysis for GCMP data including Neutral Model Analysis
zaneveld/GCMP_Neutral_Theory
zaneveld/genome_skimming
Benchmarks and analysis code for skimming of coral genomes
zaneveld/intro_to_data_studies
zaneveld/lab_safety
Laboratory with Lab Safety Information, Templates, and Issues
zaneveld/md_menagerie
The Metadata Menagerie is a collection of tools for manipulation and graphing of metadata files for microbial ecology research. Current status is simply a collection of scripts developed for other projects (not intended for external consumption). This description will be updated when the collection is ready for external use.
zaneveld/MWS
zaneveld/phylo_multivar_methods
A repository testing how various multivariate statistical methods perform when applied to comparative cross-species microbiomedata
zaneveld/qcli
Tools for developing and testing command line interfaces in Python.
zaneveld/Resilient_vs_Susceptible_Mcapitata
Microbiome analysis pipeline files for the resilient vs suscepible Montipora capitata proteomics study.
zaneveld/rorschach
zaneveld/Scheduling
Scheduling Resources for UW Bothell Biology
zaneveld/SMEAGL
SMEAGL (Simulated Microbial Evolution and Genomic LGT) is designed to simulate microbial ecology and evolution. The initial application is to explore the hypothesis that high abundances of DNA mobility elements in some deep sea hydrothermal vent microbiomes may be more strongly selected in low-richness communities
zaneveld/uwb_hyak_resources
Resources for users of the UWB Hyak nodes
zaneveld/viroscape
Tools for analysis of viral consortia with DNA sequencing
zaneveld/Zaneveld_Lab
Zaneveld Lab Website