zanglab

bart2

bart2 package

bart3d

A computational method for inferring transcriptional regulators associated with genome-wide differential chromatin interactions.

bart_py2

BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart

bart_py3

BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart

BARTweb_backend

Revised version using adaptive lasso model to predict functional transcription factors from a gene list or a ChIP-seq binding profile.

BARTweb_frontend

Docker based, new version of BARTweb

CTCF_T-ALL_code

All codes used to generate results and figure that are reported in CTCF project.

recognicer

an algorithm for identifying multi-scale broad peaks from ChIP-seq data

SICER2

utx_code

Code for UTX project

zanglab/SICER2

zanglab/bart2

bart2 package

zanglab/bart3d

A computational method for inferring transcriptional regulators associated with genome-wide differential chromatin interactions.

zanglab/CTCF_T-ALL_code

All codes used to generate results and figure that are reported in CTCF project.

zanglab/recognicer

an algorithm for identifying multi-scale broad peaks from ChIP-seq data

zanglab/bart_py3

BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart

zanglab/BARTweb_backend

Revised version using adaptive lasso model to predict functional transcription factors from a gene list or a ChIP-seq binding profile.

zanglab/BARTweb_frontend

Docker based, new version of BARTweb

zanglab/utx_code

Code for UTX project

zanglab/bart_py2

BART (Binding Analysis for Regulation of Transcription) is a bioinformatics tool for predicting functional transcription factors (TFs) that bind at genomic cis-regulatory regions to regulate gene expression in the human or mouse genomes, given a query gene set or a ChIP-seq dataset as input. http://faculty.virginia.edu/zanglab/bart

zanglab/BARTweb_custom_code

All codes used to generate the results and figures in BARTweb manuscript

zanglab/Single-cell-chromatin-profiling-of-the-primitive-gut-tube

code for the bioinformatics analyses of "Single-cell chromatin profiling of the primitive gut tube reveals regulatory dynamics underlying lineage fate decisions"

zanglab/transcriptional_condensates

zanglab/zanglab.github.io